Mass spectrometer

ABSTRACT

A drive unit for driving an acceleration electrode of a mass spectrometer is disclosed. The drive unit includes a power converter comprising a switching element and pulsing circuitry that can form output pulses suitable for driving an acceleration electrode of a mass spectrometer. The drive unit also includes a controller that is configured to synchronise operation of the switching element with the pulsing circuitry.

CROSS-REFERENCE TO RELATED APPLICATIONS

This application is a continuation of U.S. patent application Ser. No.17/056,990, filed on Nov. 19, 2020, which is a national phase filingclaiming the benefit of and priority to International Patent ApplicationNo. PCT/GB2019/051510, filed on May 31, 2019, which claims priority fromand the benefit of United Kingdom patent application No. 1808889.8 filedon May 31, 2018 and United Kingdom patent application No. 1818003.4filed on Nov. 5, 2018. The entire contents of these applications areincorporated herein by reference.

FIELD OF THE INVENTION

The present invention relates generally to analytical instruments suchas mass spectrometers, and in particular to a drive unit for driving anacceleration electrode of a mass spectrometer.

BACKGROUND

The provision of a stable power supply is important for variouscomponents of a mass spectrometer. For example, in Time of Flight(“ToF”) mass spectrometry, packets of ions are accelerated into a driftregion by supplying high voltage pulses to an acceleration electrode.The resulting drift velocity of an ion, and so its drift time throughthe drift region, is related to the mass to charge ratio of the ion.

The high voltage pulses supplied to the acceleration electrode areprovided using a high voltage power supply, such as a step-up converter.Variations in the output of the high voltage supply can reduce pulseshape uniformity, and ultimately mass resolution.

To reduce voltage ripple and improve pulse shape uniformity, filterscomprising relatively large capacitors are typically added to such aconverter's output.

The Applicants believe that there remains scope for improvements to massspectrometers, and drive units for mass spectrometer accelerationelectrodes.

SUMMARY

According to an aspect, there is provided a drive unit for producingelectrical pulses for an acceleration electrode of a mass spectrometer,the drive unit comprising:

a power converter comprising a switching element; and

pulsing circuitry operable to form electrical output pulses from anoutput of the power converter for an acceleration electrode of a massspectrometer;

wherein the drive unit is configured such that the switching element isoperated in synchronism with the pulsing circuitry.

Various embodiments are directed to a drive unit that can generate highvoltage pulses to drive an acceleration electrode, such as a pusherand/or puller electrode, of a mass spectrometer. The drive unitcomprises a power converter comprising a switching element, e.g. aswitched mode power supply or a forward converter, and pulsingcircuitry, e.g. comprising a switch, configured to form pulses from theoutput of the power converter, e.g. so as to form output pulses suitablefor driving the acceleration electrode of the mass spectrometer.

According to various embodiments, the drive unit is configured such thatthe switching element is operated in synchronism with the pulsingcircuitry, e.g. such that switching of the switching element isperformed in synchronisation with formation of output pulses by thepulsing circuitry.

In this regard, conventional power converters are generally operated atrelatively high frequencies compared to the operating frequency of thepulsing circuitry. This is because the performance, e.g. powerconversion efficiency and ripple, of the power converter is in generalimproved by using such frequencies.

The Applicants have now recognised that it is possible to operate thepower converter of the drive unit at a frequency that corresponds to theoperating frequency of the pulsing circuitry (e.g. of around 1 to 100kHz), and moreover that doing this can improve performance of theoverall mass spectrometer (despite reducing the performance, includingthe efficiency and ripple, of the power converter).

In particular, and as will be described in more detail below, bysynchronising the operation of the switching element with the pulsingcircuitry (e.g. by synchronising formation of output pulses with theswitching of the switching element), each electrical pulse output by thedrive unit can be generated at the same point in the switching cycle,and so the output ripple cycle, of the power converter. This has theeffect of substantially improving the uniformity of the output pulsesproduced by the drive unit, and means, e.g., that the drive unit canoutput pulses each having substantially the same pulse shape, even wherethe output of the power converter suffers from ripple.

This also means that the requirements for filtering the output from thepower converter, i.e. to reduce ripple, can be reduced. Thus, forexample, fewer and/or smaller capacitors can be used for outputfiltering, while maintaining sufficient pulse shape uniformity.Accordingly, various embodiments can provide a relatively simple andinexpensive drive unit for an acceleration electrode of a massspectrometer.

It will be appreciated, therefore, that various embodiments provide animproved mass spectrometer, and in particular, an improved drive unitfor an acceleration electrode of a mass spectrometer.

The power converter may comprise a step-up converter.

The power converter may be configured to step up the voltage of an inputto provide the output, wherein the voltage of the output is higher thanthe voltage of the input.

The power converter may comprise a DC-DC step-up converter configured tostep-up the voltage of a DC input to provide a DC output, wherein thevoltage of the DC output is higher than the voltage of the DC input.

The power converter may comprise a forward converter.

The power converter may comprise a voltage multiplier.

The forward converter may comprise a planar transformer.

The pulsing circuitry may comprise a switch.

The switch may be switched or pulsed to form the output pulses.

The switch may be a changeover switch.

The pulsing circuitry may further comprise polarity circuitry configuredto control the polarity of the output pulses.

The polarity of the output pulses may be positive or negative.

The pulsing circuitry may further comprise offset circuitry configuredto control an offset voltage V_(offset) of the output pulses.

The offset voltage V_(offset) may be selected from the group consistingof: (i) <−10V; (ii) −10V to −5V; (iii) −5V to 0V; (iv) 0V to 5V; (v) 5Vto 10V; and (vi) >10V.

The output pulses may be substantially square wave voltage pulses.

The peak voltage amplitude of the output pulses may be selected from thegroup consisting of: (i) <600V; (ii) 600V to 700V; (iii) 700V to 800V;(iv) 800V to 900V; (v) 900V to 1000V; (vi) 1000V to 1100V; and (vii)>1100V.

The output pulses may be formed periodically with a period T_(pulse).

The period T_(pulse) may be selected from the group consisting of: (i)<1 μs; (ii) 1 μs to 2 μs; (iii) 2 μs to 10 μs; (iv) 10 μs to 20 μs; (v)20 μs to 50 μs; (vi) 50 μs to 70 μs; (vii) 70 μs to 85 μs; (viii) 85 μsto 100 μs; and (ix) >100 μs.

The switching element and the pulsing circuitry may be operated with thesame frequency.

The switching element may be switched periodically with a periodT_(switch); wherein T_(switch)=T_(pulse).

The switching element may be switched after a predetermined time delayT_(delay) after formation of an output pulse by the pulsing circuitry.

T_(delay) may be selected from the group consisting of: (i) <0 ns; (ii)0 ns to 50 ns; (iii) 50 ns to 100 ns; (iv) 100 ns to 1 μs; (v) 1 μs to10 μs; (vi) 10 μs to 50 μs; (vii) 50 μs to 85 μs; (viii) 85 μs to 100μs; and (ix) >100 μs.

The ratio between the predetermined time delay T_(delay) and the pulsingperiod T_(pulse), T_(delay)/T_(pulse), may be selected from the groupconsisting of: (i) <0.001%; (ii) 0.001% to 0.01%; (iii) 0.01% to 0.1%;(iv) 0.1% to 0.5%; (v) 0.5% to 1%; (vi) 1% to 10%; and (vii) >10%.

The switching element and the pulsing circuitry may be operated insynchronism by operating the switching element and the pulsing circuitryusing the same clock signal.

The drive unit may comprise control circuitry configured to synchronisethe switching element with the pulsing circuitry.

The control circuitry may comprise a field programmable gate array(“FPGA”).

The control circuitry may be configured to synchronise the switchingelement with the pulsing circuitry by causing gate pulses to be appliedto a gate electrode of the switching element in synchronisation with thepulsing circuitry.

The control circuitry may further comprise feedback and/or feedforwardcircuitry configured to control the voltage of the output.

The feedback and/or feedforward circuitry may be configured to controlthe voltage of the output by controlling the width of the gate pulsesbased on an output voltage feedback signal and/or an input voltagefeedforward signal.

The width of a gate pulse may be selected from the group consisting of:(i) <1 μs; (ii) 1 μs to 3 μs; (iii) 3 μs to 5 μs; (iv) 5 μs to 7 μs; (v)7 μs to 8 μs; and (vi) >8 μs.

The feedback and/or feedforward circuitry may be operable to control thewidth of the gate pulses with a resolution selected from the groupconsisting of: (i) <1 ns; (ii) 1 ns to 5 ns; (iii) 5 ns to 10 ns; (iv)10 ns to 20 ns; and (v) >10 ns.

The drive unit may be configured to control the power converter bycontrolling the width of the gate pulses applied to the gate electrodeof the switching element.

The drive unit may be configured to, in response to a change in adesired parameter for the electrical output pulses, cause the gatepulses to be applied to the gate electrode of the switching element at aselected rate for a selected time period.

The drive unit may comprise:

processing circuitry configured to predict the effect of a change in adesired parameter for the electrical output pulses on an output voltageof the power converter; and

control circuitry configured to control the power converter based on theprediction.

The parameter for the electrical output pulses comprises: (i) a voltageamplitude; (ii) a voltage polarity; (iii) a pulse period; (iv) a pulsewidth; and/or (v) an inter-pulse period; of the electrical outputpulses.

The control circuitry may further comprise an oscilloscope, wherein thedrive unit is configured such that the electrical output pulses producedby the drive unit are supplied to the oscilloscope.

The drive unit may comprise:

measuring circuitry configured to measure an output voltage of the powerconverter; and

control circuitry configured to control the power converter based on themeasured output voltage.

The drive unit may comprise:

measuring circuitry configured to measure an input voltage to the powerconverter; and

control circuitry configured to control the power converter based on themeasured input voltage.

According to another aspect there is provided a mass spectrometercomprising:

a Time of Flight (ToF) mass analyser comprising an accelerationelectrode; and

a drive unit as described above;

wherein the mass spectrometer is configured such that electrical outputpulses produced by the drive unit are supplied to the accelerationelectrode.

The mass spectrometer may comprise damping circuitry configured to dampthe electrical output pulses produced by the drive unit before theelectrical output pulses are supplied to the acceleration electrode. Thedamping circuitry may comprise one or more damping resistors.

The mass spectrometer may comprise a conductive pin configured to supplythe electrical output pulses produced by the drive unit to theacceleration electrode.

The conductive pin may be spring loaded.

The Time of Flight (“ToF”) mass analyser may comprise a field free ordrift region.

The Time of Flight (“ToF”) mass analyser may be configured to cause ionsto be accelerated into the field free or drift region as a result of anoutput pulse being supplied to the acceleration electrode.

According to another aspect, there is provided a method of generatingelectrical pulses for an acceleration electrode of a mass spectrometer,the method comprising:

forming, from an output of a power converter comprising a switchingelement, electrical output pulses for an acceleration electrode of amass spectrometer; and

operating the switching element in synchronism with the electricaloutput pulses.

The power converter may comprise a step-up converter.

The method may comprise the power converter stepping up the voltage ofan input to provide the output, wherein the voltage of the output ishigher than the voltage of the input.

The method may comprise the power converter stepping up the voltage of aDC input to provide a DC output, wherein the voltage of the DC output ishigher than the voltage of the DC input.

The power converter may comprise a forward converter.

The power converter may comprise a voltage multiplier.

The forward converter may comprise a planar transformer.

The method may comprise forming the output pulses by switching orpulsing a switch.

The switch may comprise a changeover switch.

The method may comprise controlling the polarity of the output pulses.

The polarity of the output pulses may be positive or negative.

The method may comprise controlling an offset voltage V_(offset) of theoutput pulses.

The offset voltage V_(offset) may be selected from the group consistingof: (i) <−10V; (ii) −10V to −5V; (iii) −5V to 0V; (iv) 0V to 5V; (v) 5Vto 10V; and (vi) >10V.

The output pulses may be substantially square wave voltage pulses.

The peak voltage amplitude of the output pulses may be selected from thegroup consisting of: (i) <600V; (ii) 600V to 700V; (iii) 700V to 800V;(iv) 800V to 900V; (v) 900V to 1000V; (vi) 1000V to 1100V; and (vii)>1100V.

The method may comprise forming the output pulses periodically with aperiod T_(pulse).

The pulsing period T_(pulse) may be selected from the group consistingof: (i) <1 μs; (ii) 1 μs to 2 μs; (iii) 2 μs to 10 μs; (iv) 10 μs to 20μs; (v) 20 μs to 50 μs; (vi) 50 μs to 70 μs; (vii) 70 μs to 85 μs;(viii) 85 μs to 100 μs; and (ix) >100 μs.

The method may comprise forming the output pulses and operating theswitching element with the same frequency.

The method may comprise switching the switching element periodicallywith a period T_(switch); wherein T_(switch)=T_(pulse).

The method may comprise switching the switching element after apredetermined time delay T_(delay) from forming an output pulse.

T_(delay) may be selected from the group consisting of: (i) <0 ns; (ii)0 ns to 50 ns; (iii) 50 ns to 100 ns; (iv) 100 ns to 1 μs; (v) 1 μs to10 μs; (vi) 10 μs to 50 μs; (vii) 50 μs to 85 μs; (viii) 85 μs to 100μs; and (ix) >100 μs.

The ratio between the predetermined time delay T_(delay) and the pulsingperiod T_(pulse), T_(delay)/T_(pulse), may be selected from the groupconsisting of: (i) <0.001%; (ii) 0.001% to 0.01%; (iii) 0.01% to 0.1%;(iv) 0.1% to 0.5%; (v) 0.5% to 1%; (vi) 1% to 10%; and (vii) >10%.

The method may comprise operating the switching element in synchronismwith the electrical output pulses by operating the switching element andforming the output pulses using the same clock signal.

The method may comprise operating the switching element in synchronismwith the electrical output pulses by causing gate pulses to be appliedto a gate electrode of the switching element in synchronisation with theoutput pulses.

The method may comprise controlling the voltage of the output of thepower converter using feedback and/or feedforward circuitry.

The method may comprise controlling the voltage of the output of thepower converter by controlling the width of the gate pulses based on anoutput voltage feedback signal and/or an input voltage feedforwardsignal.

The width of a gate pulse may be selected from the group consisting of:(i) <1 μs; (ii) 1 μs to 3 μs; (iii) 3 μs to 5 μs; (iv) 5 μs to 7 μs; (v)7 μs to 8 μs; and (vi) >8 μs.

The method may comprise controlling the width of the gate pulses with aresolution selected from the group consisting of: (i) <1 ns; (ii) 1 nsto 5 ns; (iii) 5 ns to 10 ns; (iv) 10 ns to 20 ns; and (v) >10 ns.

The method may comprise controlling the power converter by controllingthe width of the gate pulses applied to the gate electrode of theswitching element.

The method may comprise, in response to a change in a desired parameterfor the electrical output pulses, causing the gate pulses to be appliedto the gate electrode of the switching element at a selected rate for aselected time period.

The method may comprise:

predicting the effect of a change in a desired parameter for theelectrical output pulses on an output voltage of the power converter;and

controlling the power converter based on the prediction.

The parameter for the electrical output pulses comprises: (i) a voltageamplitude; (ii) a voltage polarity; (iii) a pulse period; (iv) a pulsewidth; and/or (v) an inter-pulse period; of the electrical outputpulses.

The method may comprise supplying the electrical output pulses to anoscilloscope.

The method may comprise:

measuring an output voltage of the power converter; and

controlling the power converter based on the measured output voltage.

The method may comprise:

measuring an input voltage to the power converter; and

controlling the power converter based on the measured input voltage.

According to another aspect, there is provided a method of massspectrometry comprising:

generating electrical output pulses using a method as described above;and

supplying the electrical output pulses to an acceleration electrode of aTime of Flight (ToF) mass analyser.

The method may comprise damping the output pulses supplied to theacceleration electrode of the mass analyser.

The method may comprise accelerating ions into a field free or driftregion of the Time of Flight (“ToF”) mass analyser as a result of anoutput pulse being supplied to the acceleration electrode.

According to an aspect, there is provided a drive unit for producingelectrical pulses for an acceleration electrode of a mass spectrometer,the drive unit comprising:

a power converter;

pulsing circuitry operable to form electrical output pulses from anoutput of the power converter for an acceleration electrode of a massspectrometer; and

an oscilloscope, wherein the drive unit is configured such thatelectrical output pulses produced by the drive unit are supplied to theoscilloscope.

According to an aspect there is provided a mass spectrometer comprising:

a Time of Flight (ToF) mass analyser comprising an accelerationelectrode; and

the drive unit described above;

wherein the mass spectrometer is configured such that electrical outputpulses produced by the drive unit are supplied to the accelerationelectrode.

The drive unit and/or the oscilloscope may comprise an analogue todigital converter configured to digitise the electrical output pulses.

The pulsing circuitry may be configured to form electrical output pulsesthat repeat periodically with a pulse period T_(pulse).

The oscilloscope and/or the analogue to digital converter may beconfigured to digitise the electrical output pulses during a first pulseperiod T¹ _(pulse) using a first sequence of sampling points, and todigitise the electrical output pulses during a second pulse period T²_(pulse) using a second sequence of sampling points.

The second pulse period T² _(pulse) may immediately follow the firstpulse period T¹ _(pulse).

The oscilloscope and/or the analogue to digital converter may beconfigured to digitise the electrical output pulses during one or morethird pulse periods.

The one or more third periods may immediately follow the second pulseperiod.

The oscilloscope and/or the analogue to digital converter may beconfigured to periodically digitise (sample) the electrical outputpulses during each pulse period with a sampling period T_(sampling).

An initial sampling point of the first sequence of sampling points mayhave a first offset time with respect to a start time of the first pulseperiod T¹ _(pulse), and an initial sampling point of the second sequenceof sampling points may have a second different offset time with respectto a start time of the second pulse period T² _(pulse).

Each initial sampling point of each of the one or more third sequencesof sampling points may have one or more third different offset timeswith respect to a respective start time of the one or more third pulseperiods.

The drive unit and/or the mass spectrometer may be configured to combine(interleave) samples from the first, second and optionally one or morethird sequences of sampling points to produce a digitised representationof an electrical output pulse.

The drive unit and/or the mass spectrometer may be configured to analysethe digitised representation of the electrical output pulse to determineone or more diagnostic parameters of the electrical output pulses. Theone or more diagnostic parameters may be selected from: (i) a rise time;(ii) a fall time; (iii) a peak amplitude; and/or (iv) one or more othercharacteristics, of the electrical output pulses. The one or more othercharacteristics may be selected from: (i) overshoot; (ii) undershoot;(iii) droop; (iv) pre-push disturbance; (v) post-push disturbance; and(vi) another characteristic or characteristics.

According to another aspect, there is provided a method of operating adrive unit for producing electrical pulses for an acceleration electrodeof a mass spectrometer, the method comprising:

the drive unit forming electrical output pulses for an accelerationelectrode of a mass spectrometer; and

supplying the electrical output pulses to an oscilloscope of the driveunit.

According to another aspect, there is provided a method of operating amass spectrometer, the method comprising:

forming electrical output pulses for an acceleration electrode of a massspectrometer; and

supplying the electrical output pulses to an oscilloscope of the massspectrometer.

The method may comprise supplying the electrical output pulses to anacceleration electrode of a Time of Flight (ToF) mass analyser of themass spectrometer.

The method may comprise digitising the electrical output pulses using ananalogue to digital converter.

The method may comprise forming electrical output pulses that repeatperiodically with a pulse period T_(pulse).

The method may comprise digitising the electrical output pulses during afirst pulse period T¹ _(pulse) using a first sequence of samplingpoints, and digitising the electrical output pulses during a secondpulse period T² _(pulse) using a second sequence of sampling points.

The second pulse period T² _(pulse) may immediately follow the firstpulse period T¹ _(pulse).

The method may comprise digitising the electrical output pulses duringone or more third pulse periods.

The one or more third periods may immediately follow the second pulseperiod.

The method may comprise periodically digitising (sampling) theelectrical output pulses during each pulse period with a sampling periodT_(sampling).

An initial sampling point of the first sequence of sampling points mayhave a first offset time with respect to a start time of the first pulseperiod T¹ _(pulse), and an initial sampling point of the second sequenceof sampling points may have a second different offset time with respectto a start time of the second pulse period T² _(pulse).

Each initial sampling point of each of the one or more third sequencesof sampling points may have one or more third different offset timeswith respect to a respective start time of the one or more third pulseperiods.

The method may comprise combining (interleaving) samples from the first,second and optionally one or more third sequences of sampling points toproduce a digitised representation of an electrical output pulse.

The method may comprise analysing the digitised representation of theelectrical output pulse to determine one or more diagnostic parametersof the electrical output pulses. The one or more diagnostic parametersmay be selected from: (i) a rise time; (ii) a fall time; (iii) a peakamplitude; and/or (iv) one or more other characteristics, of theelectrical output pulses. The one or more other characteristics may beselected from: (i) overshoot; (ii) undershoot; (iii) droop; (iv)pre-push disturbance; (v) post-push disturbance; and (vi) anothercharacteristic or characteristics.

Although various embodiments relate to output pulses produced by theacceleration electrode drive unit being measured by the oscilloscope,other embodiments are also contemplated where other mass spectrometervoltages, such as a voltage applied to an ion guide, are also or insteadmeasured by the oscilloscope.

Thus, according to another aspect of the present invention, there isprovided a mass spectrometer comprising:

one or more electrodes;

output circuitry operable to form one or more output voltages and toapply the one or more output voltages to the one or more electrodes ofthe mass spectrometer; and

an oscilloscope, wherein the mass spectrometer is configured such thatthe one or more output voltages produced by the output circuitry aresupplied to the oscilloscope.

The one or more electrodes may comprise one or more electrodes of one ormore of: an ion source, an ion guide, ion optics, a ToF accelerationelectrode, and the like.

The oscilloscope may digitise the one or more output voltages to formone or more digitised representations of the one or more outputvoltages.

The oscilloscope and/or the mass spectrometer may comprise a processorconfigured to automatically analyse the one or more digitisedrepresentations of the one or more output voltages to determine one ormore diagnostic parameters.

According to another aspect of the present invention, there is provideda method of mass spectrometry comprising:

providing a mass spectrometer comprising one or more electrodes, and anoscilloscope; forming one or more output voltages;

applying the one or more output voltages to the one or more electrodes;and supplying the one or more output voltages to the oscilloscope.

The one or more electrodes may comprise one or more electrodes of one ormore of: an ion source, an ion guide, ion optics, a ToF accelerationelectrode, and the like.

The oscilloscope may digitise the one or more output voltages to formone or more digitised representations of the one or more outputvoltages.

The method may comprise automatically analysing the one or moredigitised representations of the one or more output voltages todetermine one or more diagnostic parameters.

Although various embodiments relate to operating the switching elementof the power converter of the acceleration electrode drive unit insynchronisation with the pulsing circuitry, other embodiments are alsocontemplated where the switching element of another mass spectrometerpower converter is operated in synchronisation with the pulsingcircuitry.

Thus, according to another aspect of the present invention, there isprovided a mass spectrometer comprising:

a power converter comprising a switching element; and pulsing circuitryoperable to form electrical output pulses for an acceleration electrodeof the mass spectrometer;

wherein the mass spectrometer is configured such that the switchingelement is operated in synchronisation with the pulsing circuitry.

The pulsing circuitry may be operable to form electrical output pulsesfrom an output of the power converter. Alternatively, the pulsingcircuitry may be operable to form electrical output pulses from anoutput of a second different power converter.

The output of the power converter may be supplied to one or more of: anion source; one or more ion guides; a detector; ion optics, and thelike, of the mass spectrometer.

According to another aspect of the present invention, there is provideda method of mass spectrometry comprising:

forming electrical output pulses for an acceleration electrode of a massspectrometer; and

operating a switching element of a power converter of the massspectrometer in synchronism with the electrical output pulses.

The electrical output pulses may be formed from an output of the powerconverter. Alternatively, the electrical output pulses may be formedfrom an output of a second different power converter.

The output of the power converter may be supplied to one or more of: anion source; one or more ion guides; a detector; ion optics, and thelike, of the mass spectrometer.

According to an aspect there is provided a mass spectrometer comprising:

a power converter configured to convert an input voltage to an outputvoltage;

measuring circuitry configured to measure the input voltage; and

control circuitry configured to control the power converter based on themeasured input voltage.

The output of the power converter may be supplied to one or more of: anion source; one or more ion guides; a detector; ion optics, and thelike, of the mass spectrometer.

The mass spectrometer may comprise pulsing circuitry operable to formelectrical output pulses from the output of the power converter. Theoutput pulses may be suitable for supplying to an acceleration electrodeof the mass spectrometer.

The mass spectrometer may comprise:

processing circuitry configured to predict the effect of a change in adesired parameter for the electrical output pulses on the powerconverter output voltage; and

control circuitry configured to control the power converter based on theprediction.

According to an aspect there is provided a mass spectrometer comprising:

a power converter configured to convert an input voltage to an outputvoltage;

pulsing circuitry operable to form electrical output pulses from theoutput of the power converter;

processing circuitry configured to predict the effect of a change in adesired parameter for the electrical output pulses on the powerconverter output voltage; and

control circuitry configured to control the power converter based on theprediction.

Various embodiments are directed to a mass spectrometer having a powerconverter that is controlled based on its input voltage and/or based ona prediction of the effect on the output voltage of a change in adesired parameter for electrical output pulses to be formed from theoutput voltage, e.g. such as a change in a desired output voltage(output voltage set-point).

Thus, the output voltage of the power converter may be controlled basedon a change to the input voltage and/or based on a change to one or moredesired electrical output pulse parameters. In other words, variousembodiments are directed to a mass spectrometer having a power converterthat is (and whose output voltage is) controlled based on a feedforwardsignal (a signal that is fed forward to the power converter), thefeedforward signal being based on an input voltage and/or based on(prediction of the effect of) a change to a desired electrical outputpulse parameter.

By controlling the power converter based on a feedforward signal, theoperation of the power converter can be adjusted to take into accountinput variations that it is known (in advance) will affect the output ofthe power converter. This can be contrasted with controlling the powerconverter based on a feedback signal, whereby the operation of the powerconverter is adjusted according to variations measured on the output ofthe power converter.

Thus, in various embodiments, the power converter can be controlledbased on the (DC) voltage of input electrical power supplied to thepower converter, whereby a change in the input voltage is fed forward tothe power converter, and the operation of the power converter isadjusted accordingly so that the output voltage generated by the powerconverter remains substantially constant, despite the change in inputvoltage.

By using a feedforward signal in this manner, a change in input voltagecan be taken into account (and compensated for) before any effects ofthe change are seen on the output voltage, and so before any feedbacksignals have had chance to compensate for the change.

In this regard, the Applicants have recognised that the input voltage tothe power converter can affect the output voltage, and that afeedforward signal based on the input voltage can be used to correct theoutput voltage sooner than would be possible by using only a feedbacksignal based on the output voltage.

In various embodiments, the power converter can additionally oralternatively be controlled based on a prediction of the effect of achange to a desired voltage pulse parameter.

The voltage pulse parameter can be any parameter, the changing of whichmay affect output pulse formation. The voltage pulse parameter may be aparameter for which it is known that changing the parameter will causethe output (voltage) of the power converter to change. Moreover, theeffect of changing the voltage pulse parameter on the power converteroutput may be predictable.

Thus, in various embodiments, the control circuitry is operable tocontrol the power converter according to a prediction of the effect ofchanging the voltage pulse parameter on the power converter output(voltage).

In this regard, the Applicants have recognised that changes to desiredvoltage pulse parameters, such as an output voltage set-point, canaffect the stability of the output of the power converter. Moreover,such effects may be predictable. Accordingly, by using a feedforwardsignal based on (a prediction of the effect of) such a change to avoltage pulse parameter, any variations to the output voltage of thepower converter resulting from the change to the voltage pulse parametercan be corrected sooner than would be possible by using only a feedbacksignal based on the output voltage.

It will be appreciated therefore, that by controlling the powerconverter based on the input voltage and/or based on a prediction of theeffect on the output voltage of a change in a desired parameter forelectrical output pulses to be formed from the output voltage in themanner of various embodiments, the output of the power converter can bemade more robust and stable with respect to input variations.

This means that the requirements for filtering the output from the powerconverter, i.e. to reduce ripple, can be reduced. Thus, for example,fewer and/or smaller capacitors can be used for output filtering, whilemaintaining sufficient output uniformity. Accordingly, variousembodiments can provide a relatively simple, inexpensive and stablepower supply for a mass spectrometer.

It will be appreciated, therefore, that various embodiments provide animproved mass spectrometer, and in particular, an improved drive unitfor an acceleration electrode of a mass spectrometer.

The parameter for the electrical output pulses may comprise: (i) avoltage amplitude; (ii) a voltage polarity; (iii) a pulse period; (iv) apulse width; and/or (v) an inter-pulse period; of the electrical outputpulses.

The mass spectrometer may comprise a Time of Flight (ToF) mass analysercomprising an acceleration electrode.

The mass spectrometer may be configured such that the electrical outputpulses are supplied to the acceleration electrode.

The Applicants have recognised that it is particularly desirable to beable to control the stability of a power converter that is generating anoutput for forming electrical output pulses for supplying to anacceleration electrode of a Time of Flight (ToF) mass spectrometer. Bycontrolling the output voltage of the power converter based on afeedforward signal, power converter output uniformity, and so pulseuniformity, can be improved. This can help to provide improve massresolution, for example.

The power converter may comprise a step-up converter comprising aswitching element. Thus, the power converter may be a switched modepower supply.

The mass spectrometer may comprise synchronisation circuitry configuredto synchronise the switching element with the pulsing circuitry.Synchronising the switching element with the pulsing circuitry canimprove uniformity of output pulses since each output pulse can begenerated at the same point in the switching cycle, and so the outputripple cycle, of the power converter.

The switching element may comprise a gate electrode.

The control circuitry may comprise pulse generating circuitry configuredto generate gate pulses to be applied to a gate electrode of theswitching element.

The control circuitry may be configured to control the power converterby controlling one or more properties of gate pulses applied to the gateelectrode of the switching element (based on the feedforward (andfeedback) signal).

The control circuitry may be configured to control the power converterbased on the measured input voltage by controlling the width of the gatepulses applied to the gate electrode of the switching element.

The control circuitry may be configured to cause the pulse generatingcircuitry to generate (apply) gate pulses at a selected (predetermined(fixed)) rate for a selected time period in response to a change in adesired parameter for the electrical output pulses. The selected timeperiod may be a predetermined (fixed) time period, or may continue untilan output voltage criterion has been satisfied. The output voltagecriterion may comprise reaching a predetermined output voltage.

The mass spectrometer may comprise a master power supply configured tosupply the input voltage to the power converter. The master power supplymay be a mains power supply, e.g. an AC to DC PSU.

The mass spectrometer may comprise one or more operational units,wherein the master power supply is configured to supply (DC) electricalpower to each of the one or more operational units.

The master power supply may supply the same (DC) voltage to each of theone or more operational units and to the power converter.

At least one of the one or more operational units may comprise a heater.Thus at least one of the one or more operational units may be a heaterunit. The heater may be, e.g. an ion source heater and/or a desolvationheater.

The control circuitry may control the power converter based on (ameasured change in the input voltage due to or a prediction of theeffect on the power converter output voltage of) a change to an inputoperational parameter of the one or more operational units.

In this regard, the Applicants have recognised that where a singlemaster power supply is supplying (DC) electrical power to a powerconverter as well as to another operational unit (or units) of the massspectrometer, such as and in particular one or more heater units,changes in the operation of the operational unit (heater unit) mayaffect the (DC) input supplied by the master power supply to the powerconverter. This may occur, for example, when an operational unit (heaterunit) (abruptly) increases or decreases its load on the master powersupply.

For example, a heater of a heater unit turning on and/or off may cause alarge load change which can cause a variation in the (DC) voltage of theinput electrical power supplied by the master power supply to the powerconverter, which can lead to a variation on the output of the powerconverter.

The Applicants have recognised that in the particular case of a massspectrometer comprising a master power supply that supplies (DC)electrical power to one or more heaters, as well as to a power converterwhich is operating to generate an output voltage for driving anacceleration electrode of a Time of Flight (ToF) mass spectrometer, aheater turning on and/or off can cause variations on the output of thepower converter which can degrade the uniformity of output pulsessupplied to the acceleration electrode. This can ultimately degrade massresolution of the Time of Flight (ToF) mass spectrometer.

Controlling the power converter according to a feedforward signal basedon a measured change in input voltage supplied to the power converterand/or based on a prediction of the effect of turning on and/or off ofthe heater can accordingly help to control any variations in the outputof the power converter that could arise as a result of the heaterturning on and/or off. This can result in improved pulse uniformity, andso improved mass resolution.

The mass spectrometer may comprise:

measuring circuitry configured to measure the output voltage; and

control circuitry configured to control the power converter based on themeasured output voltage.

Thus, the control circuitry may additionally be operable to control thepower converter based on a feedback signal. The feedback signal shouldbe based on an output (voltage) of the power converter. The feedbacksignal may be based on an (peak) output voltage of the output pulses.The feedback signal may be based on at least one, or all, of: (i) aproportional term; (ii) an integral term; and (iii) a derivative term.

According to an aspect there is provided a method of mass spectrometrycomprising:

using a power converter to convert an input voltage to an outputvoltage;

measuring the input voltage; and

controlling the power converter based on the measured input voltage.

The method may comprise forming electrical output pulses from the outputof the power converter.

The method may comprise predicting the effect of a change in a desiredparameter for the electrical output pulses on the power converter outputvoltage and controlling the power converter based on the prediction.

According to an aspect there is provided a method of mass spectrometrycomprising:

using a power converter to convert an input voltage to an outputvoltage;

forming electrical output pulses from the output of the power converter;

predicting the effect of a change in a desired parameter for theelectrical output pulses on the power converter output voltage; and

controlling the power converter based on the prediction.

The parameter for the electrical output pulses may comprise: (i) avoltage amplitude; (ii) a voltage polarity; (iii) a pulse period; (iv) apulse width; and/or (v) an inter-pulse period; of the electrical outputpulses.

The control circuitry may control the power converter based on one ormore, or all, of the above (and other) parameters.

The method may comprise supplying the electrical output pulses to anacceleration electrode of a Time of Flight (ToF) mass analyser.

The power converter may comprise a step-up converter comprising aswitching element comprising a gate electrode.

The method may comprise synchronising the switching element with thepulsing circuitry.

The switching element may comprise a gate electrode.

The method may comprise generating gate pulses to be applied to the gateelectrode of the switching element.

The method may comprise controlling the power converter by controllingone or more properties of gate pulses applied to the gate electrode ofthe switching element.

The method may comprise controlling the power converter based on themeasured input voltage by controlling the width of the gate pulsesapplied to the gate electrode.

The method may comprise, in response to a change in a desired parameterfor the electrical output pulses, generating gate pulses at a selectedrate for a selected time period.

The method may comprise a master power supply supplying the inputvoltage to the power converter.

The method may comprise the master power supply supplying electricalpower to each of one or more operational units of the mass spectrometer.

At least one of the one or more operational units may comprise a heater.

The method may comprise measuring the output voltage and controlling thepower converter based on the measured output voltage.

According to an aspect, there is provided a drive unit for producingelectrical pulses for an acceleration electrode of a mass spectrometer,the drive unit comprising:

a power converter configured to convert an input voltage to an outputvoltage;

measuring circuitry configured to measure the input voltage; and

control circuitry configured to control the power converter based on themeasured input voltage.

According to an aspect there is provided a drive unit for producingelectrical pulses for an acceleration electrode of a mass spectrometer,the drive unit comprising:

a power converter configured to convert an input voltage to an outputvoltage;

pulsing circuitry operable to form electrical output pulses from theoutput of the power converter;

processing circuitry configured to predict the effect of a change in adesired parameter for the electrical output pulses on the powerconverter output voltage; and

control circuitry configured to control the power converter based on theprediction.

According to an aspect, there is provided a mass spectrometercomprising:

a Time of Flight (ToF) mass analyser comprising an accelerationelectrode; and

the drive unit described above;

wherein the mass spectrometer is configured such that electrical outputpulses produced by the drive unit are supplied to the accelerationelectrode.

The drive unit may be configured such that the switching element isoperated in synchronism with the pulsing circuitry.

The power converter may comprise a step-up converter.

The power converter may be configured to step up the voltage of theinput to provide the output, wherein the voltage of the output is higherthan the voltage of the input.

The power converter may comprise a DC-DC step-up converter configured tostep-up the voltage of a DC input to provide a DC output, wherein thevoltage of the DC output is higher than the voltage of the DC input.

The power converter may comprise a forward converter.

The power converter may comprise a voltage multiplier.

The forward converter may comprise a planar transformer.

The pulsing circuitry may comprise a switch.

The switch may be switched or pulsed to form the output pulses.

The switch may be a changeover switch.

The pulsing circuitry may further comprise polarity circuitry configuredto control the polarity of the output pulses.

The polarity of the output pulses may be positive or negative.

The pulsing circuitry may further comprise offset circuitry configuredto control an offset voltage V_(offset) of the output pulses.

The offset voltage V_(offset) may be selected from the group consistingof: (i) <−10V; (ii) −10V to −5V; (iii) −5V to 0V; (iv) 0V to 5V; (v) 5Vto 10V; and (vi) >10V.

The output pulses may be substantially square wave voltage pulses.

The peak voltage amplitude of the output pulses may be selected from thegroup consisting of: (i) <600V; (ii) 600V to 700V; (iii) 700V to 800V;(iv) 800V to 900V; (v) 900V to 1000V; (vi) 1000V to 1100V; and (vii)>1100V.

The output pulses may be formed periodically with a period T_(pulse).

The period T_(pulse) may be selected from the group consisting of: (i)<1 μs; (ii) 1 μs to 2 μs; (iii) 2 μs to 10 μs; (iv) 10 μs to 20 μs; (v)20 μs to 50 μs; (vi) 50 μs to 70 μs; (vii) 70 μs to 85 μs; (viii) 85 μsto 100 μs; and (ix) >100 μs.

The switching element and the pulsing circuitry may be operated with thesame frequency.

The switching element may be switched periodically with a periodT_(switch); wherein T_(switch)=T_(pulse).

The switching element may be switched after a predetermined time delayT_(delay) after formation of an output pulse by the pulsing circuitry.

T_(delay) may be selected from the group consisting of: (i) <0 ns; (ii)0 ns to 50 ns; (iii) 50 ns to 100 ns; (iv) 100 ns to 1 μs; (v) 1 μs to10 μs; (vi) 10 μs to 50 μs; (vii) 50 μs to 85 μs; (viii) 85 μs to 100μs; and (ix) >100 μs.

The ratio between the predetermined time delay T_(delay) and the pulsingperiod T_(pulse), T_(delay)/T_(pulse), may be selected from the groupconsisting of: (i) <0.001%; (ii) 0.001% to 0.01%; (iii) 0.01% to 0.1%;(iv) 0.1% to 0.5%; (v) 0.5% to 1%; (vi) 1% to 10%; and (vii) >10%.

The switching element and the pulsing circuitry may be operated insynchronism by operating the switching element and the pulsing circuitryusing the same clock signal.

The drive unit may comprise control circuitry configured to synchronisethe switching element with the pulsing circuitry.

The control circuitry may comprise a field programmable gate array(“FPGA”).

The control circuitry may be configured to synchronise the switchingelement with the pulsing circuitry by causing the gate pulses to beapplied to the gate electrode of the switching element insynchronisation with the pulsing circuitry.

The control circuitry may comprise circuitry configured to control theoutput voltage of the power converter.

The control circuitry may be configured to control the output voltage bycontrolling the width (duty cycle) of the gate pulses.

The width of a gate pulse may be selected from the group consisting of:(i) <1 μs; (ii) 1 μs to 3 μs; (iii) 3 μs to 5 μs; (iv) 5 μs to 7 μs; (v)7 μs to 8 μs; and (vi) >8 μs.

The control circuitry may be operable to control the width of the gatepulses with a resolution selected from the group consisting of: (i) <1ns; (ii) 1 ns to 5 ns; (iii) 5 ns to 10 ns; (iv) 10 ns to 20 ns; and(v)>10 ns.

The control circuitry may further comprise an oscilloscope, wherein themass spectrometer may be configured such that the electrical outputpulses are supplied to the oscilloscope.

The mass spectrometer may comprise damping circuitry configured to dampthe electrical output pulses before the electrical output pulses aresupplied to the acceleration electrode. The damping circuitry maycomprise one or more damping resistors.

The Time of Flight (“ToF”) mass analyser may comprise a field free ordrift region.

The Time of Flight (“ToF”) mass analyser may be configured to cause ionsto be accelerated into the field free or drift region as a result of anoutput pulse being supplied to the acceleration electrode.

According to an aspect, there is provided a method of generatingelectrical pulses for an acceleration electrode of a mass spectrometer,the method comprising:

a power converter converting an input voltage to an output voltage;

measuring the input voltage; and

controlling the power converter based on the measured input voltage.

According to an aspect there is provided a method of generatingelectrical pulses for an acceleration electrode of a mass spectrometer,the method comprising:

a power converter converting an input voltage to an output voltage;

forming, from the output of the power converter, electrical outputpulses for an acceleration electrode of a mass spectrometer;

predicting the effect of a change in a desired parameter for theelectrical output pulses on the power converter output voltage; and

controlling the power converter based on the prediction.

The power converter may comprise a switching element. The powerconverter may be a switched mode power supply.

The method may comprise operating the switching element in synchronismwith the formation of output pulses.

The power converter may comprise a step-up converter.

The method may comprise the power converter stepping up the voltage ofthe input to provide the output, wherein the voltage of the output ishigher than the voltage of the input.

The method may comprise the power converter stepping up the voltage of aDC input to provide a DC output, wherein the voltage of the DC output ishigher than the voltage of the DC input.

The power converter may comprise a forward converter.

The power converter may comprise a voltage multiplier.

The forward converter may comprise a planar transformer.

The method may comprise forming the output pulses by switching orpulsing a switch.

The switch may comprise a changeover switch.

The method may comprise controlling the polarity of the output pulses.

The polarity of the output pulses may be positive or negative.

The method may comprise controlling an offset voltage V_(offset) of theoutput pulses.

The offset voltage V_(offset) may be selected from the group consistingof: (i) <−10V; (ii) −10V to −5V; (iii) −5V to 0V; (iv) 0V to 5V; (v) 5Vto 10V; and (vi) >10V.

The output pulses may be substantially square wave voltage pulses.

The peak voltage amplitude of the output pulses may be selected from thegroup consisting of: (i) <600V; (ii) 600V to 700V; (iii) 700V to 800V;(iv) 800V to 900V; (v) 900V to 1000V; (vi) 1000V to 1100V; and (vii)>1100V.

The method may comprise forming the output pulses periodically with aperiod T_(pulse).

The pulsing period T_(pulse) may be selected from the group consistingof: (i) <1 μs; (ii) 1 μs to 2 μs; (iii) 2 μs to 10 μs; (iv) 10 μs to 20μs; (v) 20 μs to 50 μs; (vi) 50 μs to 70 μs; (vii) 70 μs to 85 μs;(viii) 85 μs to 100 μs; and (ix) >100 μs.

The method may comprise forming the output pulses and operating theswitching element with the same frequency.

The method may comprise switching the switching element periodicallywith a period T_(switch); wherein T_(switch)=T_(pulse).

The method may comprise switching the switching element after apredetermined time delay T_(delay) from forming an output pulse.

T_(delay) may be selected from the group consisting of: (i) <0 ns; (ii)0 ns to 50 ns; (iii) 50 ns to 100 ns; (iv) 100 ns to 1 μs; (v) 1 μs to10 μs; (vi) 10 μs to 50 μs; (vii) 50 μs to 85 μs; (viii) 85 μs to 100μs; and (ix) >100 μs.

The ratio between the predetermined time delay T_(delay) and the pulsingperiod T_(pulse), T_(delay)/T_(pulse), may be selected from the groupconsisting of: (i) <0.001%; (ii) 0.001% to 0.01%; (iii) 0.01% to 0.1%;(iv) 0.1% to 0.5%; (v) 0.5% to 1%; (vi) 1% to 10%; and (vii) >10%.

The method may comprise operating the switching element in synchronismwith the electrical output pulses by operating the switching element andforming the output pulses using the same clock signal.

The method may comprise operating the switching element in synchronismwith the electrical output pulses by causing the gate pulses to beapplied to the gate electrode of the switching element insynchronisation with the output pulses.

The method may comprise controlling the voltage of the output of thepower converter.

The method may comprise controlling the voltage of the output of thepower converter by controlling the width (duty cycle) of the gatepulses.

The width of a gate pulse may be selected from the group consisting of:(i) <1 μs; (ii) 1 μs to 3 μs; (iii) 3 μs to 5 μs; (iv) 5 μs to 7 μs; (v)7 μs to 8 μs; and (vi) >8 μs.

The method may comprise controlling the width of the gate pulses with aresolution selected from the group consisting of: (i) <1 ns; (ii) 1 nsto 5 ns; (iii) 5 ns to 10 ns; (iv) i0 ns to 20 ns; and (v) >10 ns.

The method may comprise supplying the electrical output pulses to anoscilloscope.

According to another aspect, there is provided a method of massspectrometry comprising:

generating electrical output pulses using a method as described above;and

supplying the electrical output pulses to an acceleration electrode of aTime of Flight (ToF) mass analyser.

The method may comprise damping the output pulses supplied to theacceleration electrode of the mass analyser.

The method may comprise accelerating ions into a field free or driftregion of the Time of Flight (“ToF”) mass analyser as a result of anoutput pulse being supplied to the acceleration electrode.

The output of the power converter may be supplied to one or more of: anion source; one or more ion guides; a detector; ion optics, and thelike, of the mass spectrometer.

Each of the aspects described herein can, and in various embodiments do,include one or more, or all, of the optional features described herein.

According to various embodiments a relatively small footprint or compactTime of Flight (“TOF”) mass spectrometer (“MS”) or analytical instrumentis provided which has a relatively high resolution. The massspectrometer may have particular application in the biopharmaceuticalindustry and in the field of general analytical Electrospray Ionisation(“ESI”) and subsequent mass analysis. The mass spectrometer according tovarious embodiments is a high performance instrument whereinmanufacturing costs have been reduced without compromising performance.

The instrument according to various embodiments is particularly userfriendly compared with the majority of other conventional instruments.The instrument may have single button which can be activated by a userin order to turn the instrument ON and at the same time initiate aninstrument self-setup routine. The instrument may, in particular, have ahealth diagnostics system which is both helpful for users whilstproviding improved diagnosis and fault resolution.

According to various embodiments the instrument may have a healthdiagnostics or health check which is arranged to bring the overallinstrument, and in particular the mass spectrometer and mass analyser,into a state of readiness after a period of inactivity or power saving.The same health diagnostic system may also be utilised to bring theinstrument into a state of readiness after maintenance or after theinstrument switches from a maintenance mode of operation into anoperational state. Furthermore, the health diagnostics system may alsobe used to monitor the instrument, mass spectrometer or mass analyser ona periodic basis in order to ensure that the instrument in operatingwithin defined operational parameters and hence the integrity of massspectral or other data obtained is not compromised.

The health check system may determine various actions which eithershould automatically be performed or which are presented to a user todecide whether or not to proceed with. For example, the health checksystem may determine that no corrective action or other measure isrequired i.e. that the instrument is operating as expected withindefined operational limits. The health check system may also determinethat an automatic operation should be performed in order, for example,to correct or adjust the instrument in response to a detected errorwarning, error status or anomaly. The health check system may alsoinform the user that the user should either take a certain course ofaction or to give approval for the control system to take a certaincourse of action. Various embodiments are also contemplated wherein thehealth check system make seek negative approval i.e. the health checksystem may inform a user that a certain course of action will be taken,optionally after a defined time delay, unless the user instructsotherwise or cancels the proposed action suggested by the controlsystem.

Embodiments are also contemplated wherein the level of detail providedto a user may vary dependent upon the level of experience of the user.For example, the health check system may provide either very detailedinstructions or simplified instructions to a relatively unskilled user.

The health check system may provide a different level of detail to ahighly skilled user such as a service engineer. In particular,additional data and/or instructions may be provided to a serviceengineer which may not be provided to a regular user. It is alsocontemplated that instructions given to a regular user may include iconsand/or moving graphical images. For example, a user may be guided by thehealth check system in order to correct a fault and once it isdetermined that a user has completed a step then the control system maychange the icon and/or moving graphical images which are displayed tothe user in order to continue to guide the user through the process.

The instrument according to various embodiments has been designed to beas small as possible whilst also being generally compatible withexisting UPLC systems. The instrument is easy to operate and has beendesigned to have a high level of reliability. Furthermore, theinstrument has been designed so as to simplify diagnostic and servicingthereby minimising instrument downtime and operational costs.

According to various embodiments the instrument has particular utilityin the health services market and may be integrated with DesorptionElectrospray Ionisation (“DESI”) and Rapid Evaporative Ionisation MassSpectrometry (“REIMS”) ion sources in order to deliver commerciallyavailable In Vitro Diagnostic Medical Device (“IVD”)/Medical Device(“MD”) solutions for targeted applications.

The mass spectrometer may, for example, be used for microbeidentification purposes, histopathology, tissue imaging and surgical(theatre) applications.

The mass spectrometer has a significantly enhanced user experiencecompared with conventional mass spectrometers and has a high degree ofrobustness. The instrument is particularly easy to use (especially fornon-expert users) and has a high level of accessibility.

The mass spectrometer has been designed to integrate easily with liquidchromatography (“LC”) separation systems so that a LC-TOF MS instrumentmay be provided. The instrument is particularly suited for routinecharacterisation and monitoring applications in the biopharmaceuticalindustry. The instrument enables non-expert users to collect highresolution accurate mass data and to derive meaningful information fromthe data quickly and easily. This results in improved understanding ofproducts and processes with the potential to shorten time to market andreduce costs.

The instrument may be used in biopharmaceutical last stage developmentand quality control (“QC”) applications. The instrument also hasparticular application in small molecule pharmaceutical, food andenvironmental (“F&E”) and chemical materials analyses.

The instrument has enhanced mass detection capabilities i.e. high massresolution, accurate mass and an extended mass range. The instrumentalso has the ability to fragment parent ions into daughter or fragmentions so that MS/MS type experiments may be performed.

BRIEF DESCRIPTION OF THE DRAWINGS

Various embodiments together with other arrangements given forillustrative purposes only will now be described, by way of exampleonly, and with reference to the accompanying drawings in which:

FIG. 1 shows a perspective view of a bench-top Time of Flight massspectrometer according to various embodiments coupled to a conventionalbench-top liquid chromatography (“LC”) separation system;

FIG. 2A shows a front view of a bench-top mass spectrometer according tovarious embodiments showing three solvent bottles loaded into theinstrument and a front display panel, FIG. 2B shows a perspective viewof a mass spectrometer according to various embodiments and FIG. 2Cillustrates in more detail various icons which may be displayed on thefront display panel in order to highlight the status of the instrumentto a user and to indicate if a potential fault has been detected;

FIG. 3 shows a schematic representation of mass spectrometer accordingto various embodiments, wherein the instrument comprises an ElectrosprayIonisation (“ESI”) or other ion source, a conjoined ring ion guide, asegmented quadrupole rod set ion guide, one or more transfer lenses anda Time of Flight mass analyser comprising a pusher electrode, areflectron and an ion detector;

FIG. 4 shows a known Atmospheric Pressure Ionisation (“API”) ion sourcewhich may be used with the mass spectrometer according to variousembodiments;

FIG. 5 shows a first known ion inlet assembly which shares features withan ion inlet assembly according to various embodiments;

FIG. 6A shows an exploded view of the first known ion inlet assembly,FIG. 6B shows a second different known ion inlet assembly having anisolation valve, FIG. 6C shows an exploded view of an ion inlet assemblyaccording to various embodiments, FIG. 6D shows the arrangement of anion block attached to a pumping block upstream of a vacuum chamberhousing a first ion guide according to various embodiments, FIG. 6Eshows in more detail a fixed valve assembly which is retained within anion block according to various embodiments, FIG. 6F shows the removal bya user of a cone assembly attached to a clamp to expose a fixed valvehaving a gas flow restriction aperture which is sufficient to maintainthe low pressure within a downstream vacuum chamber when the cone isremoved and FIG. 6G illustrates how the fixed valve may be retained inposition by suction pressure according to various embodiments;

FIG. 7A shows a pumping arrangement according to various embodiments,FIG. 7B shows further details of a gas handling system which may beimplemented, FIG. 7C shows a flow diagram illustrating the steps whichmay be performed following a user request to the turn the AtmosphericPressure Ionisation (“API”) gas ON and FIG. 7D shows a flow chartillustrating a source pressure test which may be performed according tovarious embodiments;

FIG. 8 shows in more detail a mass spectrometer according to variousembodiments;

FIG. 9 shows a Time of Flight mass analyser assembly comprising a pusherplate assembly having mounted thereto a pusher electronics module and anion detector module and wherein a reflectron assembly is suspended froman extruded flight tube which in turn is suspended from the pusher plateassembly;

FIG. 10A shows in more detail a pusher plate assembly, FIG. 10B shows amonolithic pusher plate assembly according to various embodiments andFIG. 10C shows a pusher plate assembly with a pusher electrode assemblyor module and an ion detector assembly or module mounted thereto;

FIG. 11 shows a flow diagram illustrating various processes which occurupon a user pressing a start button on the front panel of the instrumentaccording to various embodiments;

FIG. 12A shows in greater detail three separate pumping ports of a turbomolecular pump according to various embodiments and FIG. 12B shows ingreater detail two of the three pumping ports which are arranged to pumpseparate vacuum chambers;

FIG. 13 shows in more detail a transfer lens arrangement;

FIG. 14A shows details of a known internal vacuum configuration and FIG.14B shows details of a new internal vacuum configuration according tovarious embodiments;

FIG. 15A shows a schematic of an arrangement of ring electrodes andconjoined ring electrodes forming a first ion guide which is arranged toseparate charged ions from undesired neutral particles, FIG. 15B shows aresistor chain which may be used to produce a linear axial DC electricfield along the length of a first portion of the first ion guide andFIG. 15C shows a resistor chain which may be used to produce a linearaxial DC electric field along the length of a second portion of thefirst ion guide;

FIG. 16A shows in more detail a segmented quadrupole rod set ion guideaccording to various embodiments which may be provided downstream of thefirst ion guide and which comprises a plurality of rod electrodes, FIG.16B illustrates how a voltage pulse applied to a pusher electrode of aTime of Flight mass analyser may be synchronised with trapping andreleasing ions from the end region of the segmented quadrupole rod setion guide, FIG. 16C illustrates in more detail the pusher electrodegeometry and shows the arrangement of grid and ring lenses or electrodesand their relative spacing, FIG. 16D illustrates in more detail theoverall geometry of the Time of Flight mass analyser including therelative spacings of elements of the pusher electrode and associatedelectrodes, the reflectron grid electrodes and the ion detector, FIG.16E is a schematic illustrating the wiring arrangement according tovarious embodiments of the pusher electrode and associated grid and ringelectrodes and the grid and ring electrodes forming the reflectron, FIG.16F illustrates the relative voltages and absolute voltage ranges atwhich the various ion optical components such as the Electrospraycapillary probe, differential pumping apertures, transfer lenselectrodes, pusher electrodes, reflectron electrodes and the detectorare maintained according to various embodiments, FIG. 16G is a schematicof an ion detector arrangement according to various embodiments andwhich shows various connections to the ion detector which are locatedboth within and external to the Time of Flight housing and FIG. 16Hshows an illustrative potential energy diagram;

FIG. 17A shows schematically various elements of a Time of Flight(“ToF”) mass spectrometer in accordance with various embodiments;

FIG. 17B shows schematically various elements of a Time of Flight(“ToF”) mass spectrometer in accordance with various embodiments;

FIG. 18 shows schematically a Time of Flight (“ToF”) mass analyser inaccordance with various embodiments;

FIG. 19 shows schematically an acceleration electrode drive unit inaccordance with various embodiments;

FIG. 20 shows schematically output pulses generated by an accelerationelectrode drive unit in accordance with various embodiments;

FIG. 21 shows schematically an acceleration electrode drive unit inaccordance with various embodiments;

FIG. 22 shows schematically synchronisation between output pulsesgenerated by an acceleration electrode drive unit and gate pulses forswitching a switching element of the acceleration electrode drive unit,in accordance with various embodiments;

FIG. 23A shows schematically feedback circuitry for controlling anoutput voltage of an acceleration electrode drive unit in accordancewith various embodiments;

FIG. 23B shows schematically circuitry for controlling an output voltageof an acceleration electrode drive unit in accordance with variousembodiments;

FIG. 24 shows schematically control circuitry of an accelerationelectrode drive unit in accordance with various embodiments;

FIG. 25 shows schematically oscilloscope circuitry for monitoring anoutput voltage of an acceleration electrode drive unit in accordancewith various embodiments;

FIG. 26 shows schematically sampling plural output pulses using anoscilloscope in accordance with various embodiments; and

FIG. 27 shows schematically characteristics of output pulses which maybe measured using an oscilloscope in accordance with variousembodiments.

DETAILED DESCRIPTION

Various aspects of a newly developed mass spectrometer are disclosed.The mass spectrometer may comprise a modified and improved ion inletassembly, a modified first ion guide, a modified quadrupole rod set ionguide, improved transfer optics, a novel cantilevered time of flightarrangement, a modified reflectron arrangement together with advancedelectronics and an improved user interface.

The mass spectrometer has been designed to have a high level ofperformance, to be highly reliable, to offer a significantly improveduser experience compared with the majority of conventional massspectrometers, to have a very high level of EMC compliance and to haveadvanced safety features.

The instrument comprises a highly accurate mass analyser and overall theinstrument is small and compact with a high degree of robustness. Theinstrument has been designed to reduce manufacturing cost withoutcompromising performance at the same time making the instrument morereliable and easier to service. The instrument is particularly easy touse, easy to maintain and easy to service. The instrument constitutes anext-generation bench-top Time of Flight mass spectrometer.

FIG. 1 shows a bench-top mass spectrometer 100 according to variousembodiments which is shown coupled to a conventional bench-top liquidchromatography separation device 101. The mass spectrometer 100 has beendesigned with ease of use in mind. In particular, a simplified userinterface and front display is provided and instrument serviceabilityhas been significantly improved and optimised relative to conventionalinstruments. The mass spectrometer 100 has an improved mechanical designwith a reduced part count and benefits from a simplified manufacturingprocess thereby leading to a reduced cost design, improved reliabilityand simplified service procedures. The mass spectrometer has beendesigned to be highly electromagnetic compatible (“EMC”) and exhibitsvery low electromagnetic interference (“EMI”).

FIG. 2A shows a front view of the mass spectrometer 100 according tovarious embodiments and FIG. 2B shows a perspective view of the massspectrometer according to various embodiments. Three solvent bottles 201may be coupled, plugged in or otherwise connected or inserted into themass spectrometer 100. The solvent bottles 201 may be back lit in orderto highlight the fill status of the solvent bottles 201 to a user.

One problem with a known mass spectrometer having a plurality of solventbottles is that a user may connect a solvent bottle in a wrong locationor position. Furthermore, a user may mount a solvent bottle butconventional mounting mechanisms will not ensure that a label on thefront of the solvent bottle will be positioned so that it can be viewedby a user i.e. conventional instruments may allow a solvent bottle to beconnected where a front facing label ends up facing away from the user.Accordingly, one problem with conventional instruments is that a usermay not be able to read a label on a solvent bottle due to the fact thatthe solvent bottle ends up being positioned with the label of thesolvent bottle facing away from the user. According to variousembodiments conventional screw mounts which are conventionally used tomount solvent bottles have been replaced with a resilient springmounting mechanism which allows the solvent bottles 201 to be connectedwithout rotation.

According to various embodiments the solvent bottles 201 may beilluminated by a LED light tile in order to indicate the fill level ofthe solvent bottles 201 to a user. It will be understood that a singleLED illuminating a bottle will be insufficient since the fluid in asolvent bottle 201 can attenuate the light from the LED. Furthermore,there is no good single position for locating a single LED.

The mass spectrometer 100 may have a display panel 202 upon whichvarious icons may be displayed when illuminated by the instrumentcontrol system.

A start button 203 may be positioned on or adjacent the front displaypanel 202. A user may press the start button 203 which will theninitiate a power-up sequence or routine. The power-up sequence orroutine may comprise powering-up all instrument modules and initiatinginstrument pump-down i.e. generating a low pressure in each of thevacuum chambers within the body of the mass spectrometer 100.

According to various embodiments the power-up sequence or routine may ormay not include running a source pressure test and switching theinstrument into an Operate mode of operation.

According to various embodiments a user may hold the start button 203for a period of time, e.g. 5 seconds, in order to initiate a power-downsequence.

If the instrument is in a maintenance mode of operation, then pressingthe start button 203 on the front panel of the instrument may initiate apower-up sequence. Furthermore, when the instrument is in a maintenancemode of operation then holding the start button 203 on the front panelof the instrument for a period of time, e.g. 5 seconds, may initiate apower-down sequence.

FIG. 2C illustrates in greater detail various icons which may bedisplayed on the display panel 202 and which may be illuminated underthe control of instrument hardware and/or software. According to variousembodiments one side of the display panel 202 (e.g. the left-hand side)may have various icons which generally relate to the status of theinstrument or mass spectrometer 100. For example, icons may be displayedin the colour green to indicate that the instrument is in aninitialisation mode of operation, a ready mode of operation or a runningmode of operation.

In the event of a detected error which may require user interaction oruser input a yellow or amber warning message may be displayed. A yellowor amber warning message or icon may be displayed on the display panel202 and may convey only relatively general information to a user e.g.indicating that there is a potential fault and a general indication ofwhat component or aspect of the instrument may be at fault.

According to various embodiments it may be necessary for a user to referto an associated computer display or monitor in order to get fullerdetails or gain a fuller appreciation of the nature of the fault and toreceive details of potential corrective action which is recommended toperform in order to correct the fault or to place the instrument in adesired operational state.

A user may be invited to confirm that a corrective action should beperformed and/or a user may be informed that a certain corrective actionis being performed.

In the event of a detected error which cannot be readily corrected by auser and which instead requires the services of a skilled serviceengineer then a warning message may be displayed indicating that aservice engineer needs to be called. A warning message indicating theneed for a service engineer may be displayed in the colour red and aspanner or other icon may also be displayed or illuminated to indicateto a user that an engineer is required.

The display panel 202 may also display a message that the power button203 should be pressed in order to turn the instrument OFF.

According to an embodiment one side of the display panel 202 (e.g. theright-hand side) may have various icons which indicate differentcomponents or modules of the instrument where an error or fault has beendetected. For example, a yellow or amber icon may be displayed orilluminated in order to indicate an error or fault with the ion source,a fault in the inlet cone region, a fault with the fluidic systems, anelectronics fault, a fault with one or more of the solvent or otherbottles 201 (i.e. indicating that one or more solvent bottles 201needing to be refilled or emptied), a vacuum pressure fault associatedwith one or more of the vacuum chambers, an instrument setup error, acommunication error, a problem with a gas supply or a problem with anexhaust.

It will be understood that the display panel 202 may merely indicate thegeneral status of the instrument and/or the general nature of a fault.In order to be able to resolve the fault or to understand the exactnature of an error or fault a user may need to refer to the displayscreen of an associated computer or other device. For example, as willbe understood by those skilled in the art an associated computer orother device may be arranged to receive and process mass spectral andother data output from the instrument or mass spectrometer 100 and maydisplay mass spectral data or images on a computer display screen forthe benefit of a user.

According to various embodiments the status display may indicate whetherthe instrument is in one of the following states namely Running, Ready,Getting Ready, Ready Blocked or Error.

The status display may display health check indicators such as ServiceRequired, Cone, Source, Set-up, Vacuum, Communications, Fluidics, Gas,Exhaust, Electronics, Lock-mass, Calibrant and Wash.

A “Hold power button for OFF” LED tile is shown in FIG. 2C and mayremain illuminated when the power button 203 is pressed and may remainilluminated until the power button 203 is released or until a period oftime (e.g. 5 seconds) has elapsed whichever is sooner.

If the power button 203 is released before the set period of time (e.g.less than 5 seconds after it is pressed) then the “Hold power button forOFF” LED tile may fade out over a time period of e.g. 2 μs.

The initialising LED tile may be illuminated when the instrument isstarted via the power button 203 and may remain ON until softwareassumes control of the status panel or until a power-up sequence orroutine times out.

According to various embodiments an instrument health check may beperformed and printer style error correction instructions may beprovided to a user via a display screen of a computer monitor (which maybe separate to the front display panel 202) in order to help guide auser through any steps that the user may need to perform.

The instrument may attempt to self-diagnose any error messages orwarning status alert(s) and may attempt to rectify any problem(s) eitherwith or without notifying the user.

Depending upon the severity of any problem the instrument control systemmay either attempt to correct the problem(s) itself, request the user tocarry out some form of intervention in order to attempt to correct theissue or problem(s) or may inform the user that the instrument requiresa service engineer.

In the event where corrective action may be taken by a user then theinstrument may display instructions for the user to follow and mayprovide details of methods or steps that should be performed which mayallow the user to fix or otherwise resolve the problem or error.

A resolve button may be provided on a display screen which may bepressed by a user having followed the suggested resolution instructions.The instrument may then run a test again and/or may check if the issuehas indeed been corrected. For example, if a user were to trigger aninterlock then once the interlock is closed a pressure test routine maybe initialised as detailed below.

FIG. 3 shows a high level schematic of the mass spectrometer 100according to various embodiments wherein the instrument may comprise anion source 300, such as an Electrospray Ionisation (“ESI”) ion source.However, it should be understood that the use of an ElectrosprayIonisation ion source 300 is not essential and that according to otherembodiments a different type of ion source may be used. For example,according to various embodiments a Desorption Electrospray Ionisation(“DESI”) ion source may be used. According to yet further embodiments aRapid Evaporative Ionisation Mass Spectrometry (“REIMS”) ion source maybe used.

If an Electrospray ion source 300 is provided, then the ion source 300may comprise an Electrospray probe and associated power supply.

The initial stage of the associated mass spectrometer 100 comprises anion block 802 (as shown in FIG. 6C) and a source enclosure may beprovided if an Electrospray Ionisation ion source 300 is provided.

If a Desorption Electrospray Ionisation (“DESI”) ion source is providedthen the ion source may comprise a DESI source, a DESI sprayer and anassociated DESI power supply. The initial stage of the associated massspectrometer may comprise an ion block 802 as shown in more detail inFIG. 6C. However, according to various embodiments if a DESI source isprovided then the ion block 802 may not enclosed by a source enclosure.

It will be understood that a REIMS source involves the transfer ofanalyte, smoke, fumes, liquid, gas, surgical smoke, aerosol or vapourproduced from a sample which may comprise a tissue sample. In someembodiments, the REIMS source may be arranged and adapted to aspiratethe analyte, smoke, fumes, liquid, gas, surgical smoke, aerosol orvapour in a substantially pulsed manner. The REIMS source may bearranged and adapted to aspirate the analyte, smoke, fumes, liquid, gas,surgical smoke, aerosol or vapour substantially only when anelectrosurgical cutting applied voltage or potential is supplied to oneor more electrodes, one or more electrosurgical tips or one or morelaser or other cutting devices.

The mass spectrometer 100 may be arranged so as to be capable ofobtaining ion images of a sample. For example, according to variousembodiments mass spectral and/or other physico-chemical data may beobtained as a function of position across a portion of a sample.Accordingly, a determination can be made as to how the nature of thesample may vary as a function of position along, across or within thesample.

The mass spectrometer 100 may comprise a first ion guide 301 such as aStepWave® ion guide 301 having a plurality of ring and conjoined ringelectrodes. The mass spectrometer 100 may further comprise a segmentedquadrupole rod set ion guide 302, one or more transfer lenses 303 and aTime of Flight mass analyser 304. The quadrupole rod set ion guide 302may be operated in an ion guiding mode of operation and/or in a massfiltering mode of operation. The Time of Flight mass analyser 304 maycomprise a linear acceleration Time of Flight region or an orthogonalacceleration Time of Flight mass analyser.

If the Time of Flight mass analyser comprises an orthogonal accelerationTime of Flight mass analyser 304 then the mass analyser 304 may comprisea pusher electrode 305, a reflectron 306 and an ion detector 307. Theion detector 307 may be arranged to detect ions which have beenreflected by the reflectron 306. It should be understood, however, thatthe provision of a reflectron 306 though desirable is not essential.

According to various embodiments the first ion guide 301 may be provideddownstream of an atmospheric pressure interface. The atmosphericpressure interface may comprise an ion inlet assembly.

The first ion guide 301 may be located in a first vacuum chamber orfirst differential pumping region.

The first ion guide 301 may comprise a part ring, part conjoined ringion guide assembly wherein ions may be transferred in a generally radialdirection from a first ion path formed within a first plurality of ringor conjoined ring electrodes into a second ion path formed by a secondplurality of ring or conjoined ring electrodes. The first and secondplurality of ring electrodes may be conjoined along at least a portionof their length. Ions may be radially confined within the first andsecond plurality of ring electrodes.

The second ion path may be aligned with a differential pumping aperturewhich may lead into a second vacuum chamber or second differentialpumping region.

The first ion guide 301 may be utilised to separate charged analyte ionsfrom unwanted neutral particles. The unwanted neutral particles may bearranged to flow towards an exhaust port whereas analyte ions aredirected on to a different flow path and are arranged to be optimallytransmitted through a differential pumping aperture into an adjacentdownstream vacuum chamber.

It is also contemplated that according to various embodiments ions mayin a mode of operation be fragmented within the first ion guide 301. Inparticular, the mass spectrometer 100 may be operated in a mode ofoperation wherein the gas pressure in the vacuum chamber housing thefirst ion guide 301 is maintained such that when a voltage supply causesions to be accelerated into or along the first ion guide 301 then theions may be arranged to collide with background gas in the vacuumchamber and to fragment to form fragment, daughter or product ions.According to various embodiments a static DC voltage gradient may bemaintained along at least a portion of the first ion guide 301 in orderto urge ions along and through the first ion guide 301 and optionally tocause ions in a mode of operation to fragment.

However, it should be understood that it is not essential that the massspectrometer 100 is arranged so as to be capable of performing ionfragmentation in the first ion guide 301 in a mode of operation.

The mass spectrometer 100 may comprise a second ion guide 302 downstreamof the first ion guide 302 and the second ion guide 302 may be locatedin the second vacuum chamber or second differential pumping region.

The second ion guide 302 may comprise a segmented quadrupole rod set ionguide or mass filter 302. However, other embodiments are contemplatedwherein the second ion guide 302 may comprise a quadrupole ion guide, ahexapole ion guide, an octopole ion guide, a multipole ion guide, asegmented multipole ion guide, an ion funnel ion guide, an ion tunnelion guide (e.g. comprising a plurality of ring electrodes each having anaperture through which ions may pass or otherwise forming an ion guidingregion) or a conjoined ring ion guide.

The mass spectrometer 100 may comprise one or more transfer lenses 303located downstream of the second ion guide 302. One of more of thetransfer lenses 303 may be located in a third vacuum chamber or thirddifferential pumping region. Ions may be passed through a furtherdifferential pumping aperture into a fourth vacuum chamber or fourthdifferential pumping region. One or more transfer lenses 303 may also belocated in the fourth vacuum chamber or fourth differential pumpingregion.

The mass spectrometer 100 may comprise a mass analyser 304 locateddownstream of the one or more transfer lenses 303 and may be located,for example, in the fourth or further vacuum chamber or fourth orfurther differential pumping region. The mass analyser 304 may comprisea Time of Flight (“TOF”) mass analyser. The Time of Flight mass analyser304 may comprise a linear or an orthogonal acceleration Time of Flightmass analyser.

According to various embodiments an orthogonal acceleration Time ofFlight mass analyser 304 may be provided comprising one or moreorthogonal acceleration pusher electrode(s) 305 (or alternatively and/oradditionally one or more puller electrode(s)) and an ion detector 307separated by a field free drift region. The Time of Flight mass analyser304 may optionally comprise one or more reflectrons 306 intermediate thepusher electrode 305 and the ion detector 307.

Although highly desirable, it should be recognised that the massanalyser does not have to comprise a Time of Flight mass analyser 304.More generally, the mass analyser 304 may comprise either: (i) aquadrupole mass analyser; (ii) a 2D or linear quadrupole mass analyser;(iii) a Paul or 3D quadrupole mass analyser; (iv) a Penning trap massanalyser; (v) an ion trap mass analyser; (vi) a magnetic sector massanalyser; (vii) Ion Cyclotron Resonance (“ICR”) mass analyser; (viii) aFourier Transform Ion Cyclotron Resonance (“FTICR”) mass analyser; (ix)an electrostatic mass analyser arranged to generate an electrostaticfield having a quadro-logarithmic potential distribution; (x) a FourierTransform electrostatic mass analyser; (xi) a Fourier Transform massanalyser; (xii) a Time of Flight mass analyser; (xiii) an orthogonalacceleration Time of Flight mass analyser; or (xiv) a linearacceleration Time of Flight mass analyser.

Although not shown in FIG. 3, the mass spectrometer 100 may alsocomprise one or more optional further devices or stages. For example,according to various embodiments the mass spectrometer 100 mayadditionally comprise one or more ion mobility separation devices and/orone or more Field Asymmetric Ion Mobility Spectrometer (“FAIMS”) devicesand/or one or more devices for separating ions temporally and/orspatially according to one or more physico-chemical properties. Forexample, the mass spectrometer 100 according to various embodiments maycomprise one or more separation stages for temporally or otherwiseseparating ions according to their mass, collision cross section,conformation, ion mobility, differential ion mobility or anotherphysico-chemical parameter.

The mass spectrometer 100 may comprise one or more discrete ion traps orone or more ion trapping regions. However, as will be described in moredetail below, an axial trapping voltage may be applied to one or moresections or one or more electrodes of either the first ion guide 301and/or the second ion guide 302 in order to confine ions axially for ashort period of time. For example, ions may be trapped or confinedaxially for a period of time and then released. The ions may be releasedin a synchronised manner with a downstream ion optical component. Forexample, in order to enhance the duty cycle of analyte ions of interest,an axial trapping voltage may be applied to the last electrode or stageof the second ion guide 302. The axial trapping voltage may then beremoved and the application of a voltage pulse to the pusher electrode305 of the Time of Flight mass analyser 304 may be synchronised with thepulsed release of ions so as to increase the duty cycle of analyte ionsof interest which are then subsequently mass analysed by the massanalyser 304. This approach may be referred to as an Enhanced Duty Cycle(“EDC”) mode of operation.

Furthermore, the mass spectrometer 100 may comprise one or morecollision, fragmentation or reaction cells selected from the groupconsisting of: (i) a Collisional Induced Dissociation (“CID”)fragmentation device; (ii) a Surface Induced Dissociation (“SID”)fragmentation device; (iii) an Electron Transfer Dissociation (“ETD”)fragmentation device; (iv) an Electron Capture Dissociation (“ECD”)fragmentation device; (v) an Electron Collision or Impact Dissociationfragmentation device; (vi) a Photo Induced Dissociation (“PID”)fragmentation device; (vii) a Laser Induced Dissociation fragmentationdevice; (viii) an infrared radiation induced dissociation device; (ix)an ultraviolet radiation induced dissociation device; (x) anozzle-skimmer interface fragmentation device; (xi) an in-sourcefragmentation device; (xii) an in-source Collision Induced Dissociationfragmentation device; (xiii) a thermal or temperature sourcefragmentation device; (xiv) an electric field induced fragmentationdevice; (xv) a magnetic field induced fragmentation device; (xvi) anenzyme digestion or enzyme degradation fragmentation device; (xvii) anion-ion reaction fragmentation device; (xviii) an ion-molecule reactionfragmentation device; (xix) an ion-atom reaction fragmentation device;(xx) an ion-metastable ion reaction fragmentation device; (xxi) anion-metastable molecule reaction fragmentation device; (xxii) anion-metastable atom reaction fragmentation device; (xxiii) an ion-ionreaction device for reacting ions to form adduct or product ions; (xxiv)an ion-molecule reaction device for reacting ions to form adduct orproduct ions; (xxv) an ion-atom reaction device for reacting ions toform adduct or product ions; (xxvi) an ion-metastable ion reactiondevice for reacting ions to form adduct or product ions; (xxvii) anion-metastable molecule reaction device for reacting ions to form adductor product ions; (xxviii) an ion-metastable atom reaction device forreacting ions to form adduct or product ions; and (xxix) an ElectronIonisation Dissociation (“EID”) fragmentation device.

The mass spectrometer 100 may comprise one or more mass filters selectedfrom the group consisting of: (i) a quadrupole mass filter; (ii) a 2D orlinear quadrupole ion trap; (iii) a Paul or 3D quadrupole ion trap; (iv)a Penning ion trap; (v) an ion trap; (vi) a magnetic sector mass filter;(vii) a Time of Flight mass filter; and (viii) a Wien filter.

The fourth or further vacuum chamber or fourth or further differentialpumping region may be maintained at a lower pressure than the thirdvacuum chamber or third differential pumping region. The third vacuumchamber or third differential pumping region may be maintained at alower pressure than the second vacuum chamber or second differentialpumping region and the second vacuum chamber or second differentialpumping region may be maintained at a lower pressure than the firstvacuum chamber or first differential pumping region. The first vacuumchamber or first differential pumping region may be maintained at lowerpressure than ambient. Ambient pressure may be considered to be approx.1013 mbar at sea level.

The mass spectrometer 100 may comprise an ion source configured togenerate analyte ions. In various particular embodiments, the ion sourcemay comprise an Atmospheric Pressure Ionisation (“API”) ion source suchas an Electrospray Ionisation (“ESI”) ion source or an AtmosphericPressure Chemical Ionisation (“APCI”) ion source.

FIG. 4 shows in general form a known Atmospheric Pressure Ionisation(“API”) ion source such as an Electrospray Ionisation (“ESI”) ion sourceor an Atmospheric Pressure Chemical Ionisation (“APCI”) ion source. Theion source may comprise, for example, an Electrospray Ionisation probe401 which may comprise an inner capillary tube 402 through which ananalyte liquid may be supplied. The analyte liquid may comprise mobilephase from a LC column or an infusion pump. The analyte liquid entersvia the inner capillary tube 402 or probe and is pneumatically convertedto an electrostatically charged aerosol spray. Solvent is evaporatedfrom the spray by means of heated desolvation gas. Desolvation gas maybe provided through an annulus which surrounds both the inner capillarytube 402 and an intermediate surrounding nebuliser tube 403 throughwhich a nebuliser gas emerges. The desolvation gas may be heated by anannular electrical desolvation heater 404. The resulting analyte andsolvent ions are then directed towards a sample or sampling coneaperture mounted into an ion block 405 forming an initial stage of themass spectrometer 100.

The inner capillary tube 402 is preferably surrounded by a nebulisertube 403. The emitting end of the inner capillary tube 402 may protrudebeyond the nebuliser tube 403. The inner capillary tube 402 and thenebuliser tube 403 may be surrounded by a desolvation heater arrangement404 as shown in FIG. 4 wherein the desolvation heater 404 may bearranged to heat a desolvation gas. The desolvation heater 404 may bearranged to heat a desolvation gas from ambient temperature up to atemperature of around 600° C. According to various embodiments thedesolvation heater 404 is always OFF when the API gas is OFF.

The desolvation gas and the nebuliser gas may comprise nitrogen, air oranother gas or mixture of gases. The same gas (e.g. nitrogen, air oranother gas or mixture of gases) may be used as both a desolvation gas,nebuliser gas and cone gas. The function of the cone gas will bedescribed in more detail below.

The inner probe capillary 402 may be readily replaced by an unskilleduser without needing to use any tools. The Electrospray probe 402 maysupport LC flow rates in the range of 0.3 to 1.0 mL/min.

According to various embodiments an optical detector may be used inseries with the mass spectrometer 100. It will be understood that anoptical detector may have a maximum pressure capability of approx. 1000psi. Accordingly, the Electrospray Ionisation probe 401 may be arrangedso as not to cause a back pressure of greater than around 500 psi,allowing for back pressure caused by other system components. Theinstrument may be arranged so that a flow of 50:50 methanol/water at 1.0mL/min does not create a backpressure greater than 500 psi.

According to various embodiments a nebuliser flow rate of between 106 to159 L/hour may be utilised.

The ESI probe 401 may be powered by a power supply which may have anoperating range of 0.3 to 1.5 kV.

It should, however, be understood that various other different types ofion source may instead be coupled to the mass spectrometer 100. Forexample, according to various embodiments, the ion source may moregenerally comprise either: (i) an Electrospray ionisation (“ESI”) ionsource; (ii) an Atmospheric Pressure Photo Ionisation (“APPI”) ionsource; (iii) an Atmospheric Pressure Chemical Ionisation (“APCI”) ionsource; (iv) a Matrix Assisted Laser Desorption Ionisation (“MALDI”) ionsource; (v) a Laser Desorption Ionisation (“LDI”) ion source; (vi) anAtmospheric Pressure Ionisation (“API”) ion source; (vii) a DesorptionIonisation on Silicon (“DIOS”) ion source; (viii) an Electron Impact(“EI”) ion source; (ix) a Chemical Ionisation (“CI”) ion source; (x) aField Ionisation (“FI”) ion source; (xi) a Field Desorption (“FD”) ionsource; (xii) an Inductively Coupled Plasma (“ICP”) ion source; (xiii) aFast Atom Bombardment (“FAB”) ion source; (xiv) a Liquid Secondary IonMass Spectrometry (“LSIMS”) ion source; (xv) a Desorption ElectrosprayIonisation (“DESI”) ion source; (xvi) a Nickel-63 radioactive ionsource; (xvii) an Atmospheric Pressure Matrix Assisted Laser DesorptionIonisation ion source; (xviii) a Thermospray ion source; (xix) anAtmospheric Sampling Glow Discharge Ionisation (“ASGDI”) ion source;(xx) a Glow Discharge (“GD”) ion source; (xxi) an Impactor ion source;(xxii) a Direct Analysis in Real Time (“DART”) ion source; (xxiii) aLaserspray Ionisation (“LSI”) ion source; (xxiv) a Sonicspray Ionisation(“SSI”) ion source; (xxv) a Matrix Assisted Inlet Ionisation (“MAII”)ion source; (xxvi) a Solvent Assisted Inlet Ionisation (“SAII”) ionsource; (xxvii) a Desorption Electrospray Ionisation (“DESI”) ionsource; (xxviii) a Laser Ablation Electrospray Ionisation (“LAESI”) ionsource; (xxix) a Surface Assisted Laser Desorption Ionisation (“SALDI”)ion source; or (xxx) a Low Temperature Plasma (“LTP”) ion source.

A chromatography or other separation device may be provided upstream ofthe ion source 300 and may be coupled so as to provide an effluent tothe ion source 300. The chromatography separation device may comprise aliquid chromatography or gas chromatography device. Alternatively, theseparation device may comprise: (i) a Capillary Electrophoresis (“CE”)separation device; (ii) a Capillary Electrochromatography (“CEC”)separation device; (iii) a substantially rigid ceramic-based multilayermicrofluidic substrate (“ceramic tile”) separation device; or (iv) asupercritical fluid chromatography separation device.

The mass spectrometer 100 may comprise an atmospheric pressure interfaceor ion inlet assembly downstream of the ion source 300. According tovarious embodiments the atmospheric pressure interface may comprise asample or sampling cone 406,407 which is located downstream of the ionsource 401. Analyte ions generated by the ion source 401 may pass viathe sample or sampling cone 406,407 into or onwards towards a firstvacuum chamber or first differential pumping region of the massspectrometer 100. However, according to other embodiments theatmospheric pressure interface may comprise a capillary interface.

As shown in FIG. 4, ions generated by the ion source 401 may be directedtowards an atmospheric pressure interface which may comprise an outergas cone 406 and an inner sample cone 407. A cone gas may be supplied toan annular region between the inner sample cone 407 and the outer gascone 406. The cone gas may emerge from the annulus in a direction whichis generally opposed to the direction of ion travel into the massspectrometer 100. The cone gas may act as a declustering gas whicheffectively pushes away large contaminants thereby preventing largecontaminants from impacting upon the outer cone 406 and/or inner cone407 and also preventing the large contaminants from entering into theinitial vacuum stage of the mass spectrometer 100.

FIG. 5 shows in more detail a first known ion inlet assembly which issimilar to an ion inlet assembly according to various embodiments. Theknown ion inlet assembly as shown and described below with reference toFIGS. 5 and 6A is presented in order to highlight various aspects of anion inlet assembly according to various embodiments and also so thatdifferences between an ion inlet assembly according to variousembodiments as shown and discussed below with reference to FIG. 6C canbe fully appreciated.

With reference to FIG. 5, it will be understood that the ion source (notshown) generates analyte ions which are directed towards a vacuumchamber 505 of the mass spectrometer 100.

A gas cone assembly is provided comprising an inner gas cone or samplingcone 513 having an aperture 515 and an outer gas cone 517 having anaperture 521. A disposable disc 525 is arranged beneath or downstream ofthe inner gas cone or sampling 513 and is held in position by a mountingelement 527. The disc 525 covers an aperture 511 of the vacuum chamber505. The disc 525 is removably held in position by the inner gas cone513 resting upon the mounting element 527.

As will be discussed in more detail below with reference to FIG. 6C,according to various embodiments the mounting element 527 is notprovided in the preferred ion inlet assembly.

The disc 525 has an aperture or sampling orifice 529 through which ionscan pass.

A carrier 531 is arranged underneath or below the disc 525. The carrier531 is arranged to cover the aperture 511 of the vacuum chamber 505.Upon removal of the disc 525, the carrier 531 may remain in place due tosuction pressure.

FIG. 6A shows an exploded view of the first known ion inlet assembly.The outer gas cone 517 has a cone aperture 521 and is slidably mountedwithin a clamp 535. The clamp 535 allows a user to remove the outer gascone 517 without physically having to touch the outer gas cone 517 whichwill get hot during use.

An inner gas cone or sampling cone 513 is shown mounted behind or belowthe outer gas cone 517.

The known arrangement utilises a carrier 531 which has a 1 mm diameteraperture. The ion block 802 is also shown having a calibration port 550.However, the calibration port 550 is not provided in an ion inletassembly according to various embodiments.

FIG. 6B shows a second different known ion inlet assembly as used on adifferent instrument which has an isolation valve 560 which is requiredto hold vacuum pressure when the outer cone gas nozzle 517 and the innernozzle 513 are removed for servicing. The inner cone 513 has a gaslimiting orifice into the subsequent stages of the mass spectrometer.The inner gas cone 513 comprises a high cost, high precision part whichrequires routine removal and cleaning. The inner gas cone 513 is not adisposable or consumable item. Prior to removing the inner sampling cone513 the isolation valve 560 must be rotated into a closed position inorder to isolate the downstream vacuum stages of the mass spectrometerfrom atmospheric pressure. The isolation valve 560 is therefore requiredin order to hold vacuum pressure whilst the inner gas sampling cone 513is removed for cleaning.

FIG. 6C shows an exploded view of an ion inlet assembly according tovarious embodiments. The ion inlet assembly according to variousembodiments is generally similar to the first known ion inlet assemblyas shown and described above with reference to FIGS. 5 and 6A except fora few differences. One difference is that a calibration port 550 is notprovided in the ion block 802 and a mounting member or mounting element527 is not provided.

Accordingly, the ion block 802 and ion inlet assembly have beensimplified. Furthermore, importantly the disc 525 may comprise a 0.25 or0.30 mm diameter aperture disc 525 which is substantially smallerdiameter than conventional arrangements.

According to various embodiments both the disc 525 and the vacuumholding member or carrier 531 may have a substantially smaller diameteraperture than conventional arrangements such as the first knownarrangement as shown and described above with reference to FIGS. 5 and6A.

For example, the first known instrument utilises a vacuum holding memberor carrier 531 which has a 1 mm diameter aperture. In contrast,according to various embodiments the vacuum holding member or carrier531 according to various embodiments may have a much smaller diameteraperture e.g. a 0.3 mm or 0.40 mm diameter aperture.

FIG. 6D shows in more detail how the ion block assembly 802 according tovarious embodiments may be enclosed in an atmospheric pressure source orhousing. The ion block assembly 802 may be mounted to a pumping block orthermal interface 600. Ions pass through the ion block assembly 802 andthen through the pumping block or thermal interface 600 into a firstvacuum chamber 601 of the mass spectrometer 100. The first vacuumchamber 601 preferably houses the first ion guide 301 which as shown inFIG. 6D and which may comprise a conjoined ring ion guide 301. FIG. 6Dalso indicates how ion entry 603 into the mass spectrometer 100 alsorepresents a potential leak path. A correct pressure balance is requiredbetween the diameters of the various gas flow restriction apertures inthe ion inlet assembly with the configuration of the vacuum pumpingsystem.

FIG. 6E shows the ion inlet assembly according to various embodimentsand illustrates how ions pass through an outer gas cone 517 and an innergas cone or sampling cone 513 before passing through an apertured disc525. No mounting member or mounting element is provided unlike the firstknown ion inlet assembly as described above.

The ions then pass through an aperture in a fixed valve 690. The fixedvalve 690 is held in place by suction pressure and is not removable by auser in normal operation. Three O-ring vacuum seals 692 a,692 b,692 care shown. The fixed valve 690 may be formed from stainless steel. Avacuum region 695 of the mass spectrometer 100 is generally indicated.

FIG. 6F shows the outer cone 517, inner sampling cone 513 and apertureddisc 525 having been removed by a user by withdrawing or removing aclamp 535 to which at least the outer cone 517 is slidably inserted.According to various embodiments the inner sampling cone 513 may also beattached or secured to the outer cone 517 so that both are removed atthe same time.

Instead of utilising a conventional rotatable isolation valve, a fixednon-rotatable valve 690 is provided or otherwise retained in the ionblock 802. An O-ring seal 692 a is shown which ensures that a vacuumseal is provided between the exterior body of the fixed valve 690 andthe ion block 802. An ion block voltage contact 696 is also shown.O-rings seals 692 b,692 c for the inner and outer cones 513,517 are alsoshown.

FIG. 6G illustrates how according to various embodiments a fixed valve690 may be retained within an ion block 802 and may form a gas tightsealing therewith by virtue of an O-ring seal 692 a. A user is unable toremove the fixed valve 690 from the ion block 802 when the instrument isoperated due to the vacuum pressure within the vacuum chamber 695 of theinstrument. The direction of suction force which holds the fixed valve690 in a fixed position against the ion block 802 during normaloperation is shown.

The size of the entrance aperture into the fixed valve 690 is designedfor optimum operation conditions and component reliability. Variousembodiments are contemplated wherein the shape of the entrance aperturemay be cylindrical. However, other embodiments are contemplated whereinthere may be more than one entrance aperture and/or wherein the one ormore entrance apertures to the fixed valve 690 may have a non-circularaperture. Embodiments are also contemplated wherein the one or moreentrance apertures may be angled at a non-zero angle to the longitudinalaxis of the fixed valve 690.

It will be understood that total removal of the fixed valve 690 from theion block 802 will rapidly result in total loss of vacuum pressurewithin the mass spectrometer 100.

According to various embodiments the ion inlet assembly may betemporarily sealed in order to allow a vacuum housing within the massspectrometer 100 to be filled with dry nitrogen for shipping. It will beappreciated that filling a vacuum chamber with dry nitrogen allowsfaster initial pump-down during user initial instrument installation.

It will be appreciated that since according to various embodiments theinternal aperture in the vacuum holding member or carrier 531 issubstantially smaller in diameter than conventional arrangements, thenthe vacuum within the first and subsequent vacuum chambers of theinstrument can be maintained for substantially longer periods of timethan is possible conventionally when the disc 525 is removed and/orreplaced.

Accordingly, the mass spectrometer 100 according to various embodimentsdoes not require an isolation valve in contrast with other known massspectrometers in order to maintain the vacuum within the instrument whena component such as the outer gas cone 517, the inner gas cone 513 orthe disc 525 are removed.

A mass spectrometer 100 according to various embodiments thereforeenables a reduced cost instrument to be provided which is also simplerfor a user to operate since no isolation valve is needed. Furthermore, auser does not need to be understand or learn how to operate such anisolation valve.

The ion block assembly 802 may comprise a heater in order to keep theion block 802 above ambient temperature in order to prevent droplets ofanalyte, solvent, neutral particles or condensation from forming withinthe ion block 802.

According to an embodiment when a user wishes to replace and/or removeeither the outer cone 517 and/or the inner sampling cone 513 and/or thedisc 525 then both the source or ion block heater and the desolvationheater 404 may be turned OFF. The temperature of the ion block 802 maybe monitored by a thermocouple which may be provided within the ionblock heater or which may be otherwise provided in or adjacent to theion block 802.

When the temperature of the ion block is determined to have droppedbelow a certain temperature such as e.g. 550C then the user may beinformed that the clamp 535, outer gas cone 517, inner gas sampling cone513 and disc 525 are sufficiently cooled down such that a user can touchthem without serious risk of injury.

According to various embodiment a user can simply remove and/or replacethe outer gas cone 517 and/or inner gas sampling cone 513 and/or disc525 in less than two minutes without needing to vent the instrument. Inparticular, the low pressure within the instrument is maintained for asufficient period of time by the aperture in the fixed valve 690.

According to various embodiments the instrument may be arranged so thatthe maximum leak rate into the source or ion block 802 during samplecone maintenance is approx. 7 mbar L/s. For example, assuming a backingpump speed of 9 m3/hour (2.5 L/s) and a maximum acceptable pressure of 3mbar, then the maximum leak rate during sampling cone maintenance may beapprox. 2.5 L/s×3 mbar=7.5 mbar L/s.

The ion block 802 may comprise an ion block heater having a K-typethermistor. As will be described in more detail below, according tovarious embodiments the source (ion block) heater may be disabled toallow forced cooling of the source or ion block 802. For example,desolvation heater 404 and/or ion block heater may be switched OFFwhilst API gas is supplied to the ion block 802 in order to cool itdown. According to various embodiments either a desolvation gas flowand/or a nebuliser gas flow from the probe 401 may be directed towardsthe cone region 517,513 of the ion block 802. Additionally and/oralternatively, the cone gas supply may be used to cool the ion block 802and the inner and outer cones 513,517. In particular, by turning thedesolvation heater 404 OFF but maintaining a supply of nebuliser and/ordesolvation gas from the probe 401 so as to fill the enclosure housingthe ion block with ambient temperature nitrogen or other gas will have arapid cooling effect upon the metal and plastic components forming theion inlet assembly which may be touched by a user during servicing.Ambient temperature (e.g. in the range 18-25° C.) cone gas may also besupplied in order to assist with cooling the ion inlet assembly in arapid manner. Conventional instruments do not have the functionality toinduce rapid cooling of the ion block 802 and gas cones 521,513.

Liquid and gaseous exhaust from the source enclosure may be fed into atrap bottle. The drain tubing may be routed so as to avoid electroniccomponents and wiring. The instrument may be arranged so that liquid inthe source enclosure always drains out even when the instrument isswitched OFF. For example, it will be understood that an LC flow intothe source enclosure could be present at any time.

An exhaust check valve may be provided so that when the API gas isturned OFF the exhaust check valve prevents a vacuum from forming in thesource enclosure and trap bottle. The exhaust trap bottle may have acapacity ≥5 L.

The fluidics system may comprise a piston pump which allows theautomated introduction of a set-up solution into the ion source. Thepiston pump may have a flow rate range of 0.4 to 50 mL/min. Adivert/select valve may be provided which allows rapid automatedchangeover between LC flow and the flow of one or two internal set-upsolutions into the source.

According to various embodiments three solvent bottles 201 may beprovided. Solvent A bottle may have a capacity within the range 250-300mL, solvent B bottle may have a capacity within the range 50-60 mL andsolvent C bottle may have a capacity within the range 100-125 mL. Thesolvent bottles 201 may be readily observable by a user who may easilyrefill the solvent bottles.

According to an embodiment solvent A may comprise a lock-mass, solvent Bmay comprise a calibrant and solvent C may comprise a wash. Solvent C(wash) may be connected to a rinse port.

A driver PCB may be provided in order to control the piston pump and thedivert/select valve. On power-up the piston pump may be homed andvarious purge parameters may be set.

Fluidics may be controlled by software and may be enabled as a functionof the instrument state and the API gas valve state in a manner asdetailed below:

Instrument state API gas valve Software control of fluidics Operate OpenEnabled Operate Closed Disabled Over-pressure Open Enabled Over-pressureClosed Disabled Power Save Open Disabled Power Save Closed Disabled

When software control of the fluidics is disabled then the valve is setto a divert position and the pump is stopped.

FIG. 7A illustrates a vacuum pumping arrangement according to variousembodiments.

A split-flow turbo molecular vacuum pump (commonly referred to as a“turbo” pump) may be used to pump the fourth or further vacuum chamberor fourth or further differential pumping region, the third vacuumchamber or third differential pumping region, and the second vacuumchamber or second differential pumping region. According to anembodiment the turbo pump may comprise either a Pfeiffer® Splitflow 310fitted with a TC110 controller or an Edwards® nEXT300/100/100D turbopump. The turbo pump may be air cooled by a cooling fan.

The turbo molecular vacuum pump may be backed by a rough, roughing orbacking pump such as a rotary vane vacuum pump or a diaphragm vacuumpump. The rough, roughing or backing pump may also be used to pump thefirst vacuum chamber housing the first ion guide 301. The rough,roughing or backing pump may comprise an Edwards® nRV14i backing pump.The backing pump may be provided external to the instrument and may beconnected to the first vacuum chamber which houses the first ion guide301 via a backing line 700 as shown in FIG. 7A.

A first pressure gauge such as a cold cathode gauge 702 may be arrangedand adapted to monitor the pressure of the fourth or further vacuumchamber or fourth or further differential pumping region. According toan embodiment the Time of Flight housing pressure may be monitored by anInficon® MAG500 cold cathode gauge 702.

A second pressure gauge such as a Pirani gauge 701 may be arranged andadapted to monitor the pressure of the backing pump line 700 and hencethe first vacuum chamber which is in fluid communication with theupstream pumping block 600 and ion block 802. According to an embodimentthe instrument backing pressure may be monitored by an Inficon® PSG500Pirani gauge 701.

According to various embodiments the observed leak plus outgassing rateof the Time of Flight chamber may be arranged to be less than 4×10−5mbar L/s. Assuming a 200 L/s effective turbo pumping speed then theallowable leak plus outgassing rate is 5×10−7 mbar×200 L/s=1×10−4 mbarL/s.

A turbo pump such as an Edwards® nEXT300/100/100D turbo pump may be usedwhich has a main port pumping speed of 400 L/s. As will be detailed inmore detail below, EMC shielding measures may reduce the pumping speedby approx. 20% so that the effective pumping speed is 320 L/s.Accordingly, the ultimate vacuum according to various embodiments may be4×10−5 mbar L/s/320 L/s=1.25×10−7 mbar.

According to an embodiment a pump-down sequence may comprise closing asoft vent solenoid as shown in FIG. 7B, starting the backing pump andwaiting until the backing pressure drops to 32 mbar. If 32 mbar is notreached within 3 minutes of starting the backing pump, then a ventsequence may be performed. Assuming that a pressure of 32 mbar isreached within 3 minutes then the turbo pump is then started. When theturbo speed exceeds 80% of maximum speed then the Time of Flight vacuumgauge 702 may then be switched ON. It will be understood that the vacuumgauge 702 is a sensitive detector and hence is only switched ON when thevacuum pressure is such that the vacuum gauge 702 which not be damaged.

If the turbo speed does not reach 80% of maximum speed within 8 minutes,then a vent sequence may be performed.

A pump-down sequence may be deemed completed once the Time of Flightvacuum chamber pressure is determined to be <1×10−5 mbar.

If a vent sequence is to be performed, then the instrument may beswitched to a Standby mode of operation. The Time of Flight vacuum gauge702 may be switched OFF and the turbo pump may also be switched OFF.When the turbo pump speed falls to less than 80% of maximum then a softvent solenoid valve as shown in FIG. 7B may be opened. The system maythen wait for 10 seconds before then switching OFF the backing pump.

It will be understood by those skilled in the art that the purpose ofthe turbo soft vent solenoid valve as shown in FIG. 7B and the soft ventline is to enable the turbo pump to be vented at a controlled rate. Itwill be understood that if the turbo pump is vented at too fast a ratethen the turbo pump may be damaged.

The instrument may switch into a maintenance mode of operation whichallows an engineer to perform service work on all instrument sub-systemsexcept for the vacuum system or a subsystem incorporating the vacuumsystem without having to vent the instrument. The instrument may bepumped down in maintenance mode and conversely the instrument may alsobe vented in maintenance mode.

A vacuum system protection mechanism may be provided wherein if theturbo speed falls to less than 80% of maximum speed then a vent sequenceis initiated. Similarly, if the backing pressure increases to greaterthan 10 mbar then a vent sequence may also be initiated. According to anembodiment if the turbo power exceeds 120 W for more than 15 minutesthen a vent sequence may also be initiated. If on instrument power-upthe turbo pump speed is >80% of maximum then the instrument may be setto a pumped state, otherwise the instrument may be set to a ventingstate.

FIG. 7B shows a schematic of a gas handling system which may be utilisedaccording to various embodiments. A storage check valve 721 may beprovided which allows the instrument to be filled with nitrogen forstorage and transport. The storage check valve 721 is in fluidcommunication with an inline filter.

A soft vent flow restrictor may be provided which may limit the maximumgas flow to less than the capacity of a soft vent relief valve in orderto prevent the analyser pressure from exceeding 0.5 bar in a singlefault condition. The soft vent flow restrictor may comprise an orificehaving a diameter in the range 0.70 to 0.75 mm.

A supply pressure sensor 722 may be provided which may indicate if thenitrogen pressure has fallen below 4 bar.

An API gas solenoid valve may be provided which is normally closed andwhich has an aperture diameter of not less than 1.4 mm.

An API gas inlet is shown which preferably comprises a Nitrogen gasinlet. According to various embodiments the nebuliser gas, desolvationgas and cone gas are all supplied from a common source of nitrogen gas.

A soft vent regulator may be provided which may function to prevent theanalyser pressure exceeding 0.5 bar in normal condition.

A soft vent check valve may be provided which may allow the instrumentto vent to atmosphere in the event that the nitrogen supply is OFF.

A soft vent relief valve may be provided which may have a crackingpressure of 345 mbar. The soft vent relief valve may function to preventthe pressure in the analyser from exceeding 0.5 bar in a single faultcondition. The gas flow rate through the soft vent relief valve may bearranged so as not to be less than 2000 L/h at a differential pressureof 0.5 bar.

The soft vent solenoid valve may normally be in an open position. Thesoft vent solenoid valve may be arranged to restrict the gas flow ratein order to allow venting of the turbo pump at 100% rotational speedwithout causing damage to the pump. The maximum orifice diameter may be1.0 mm.

The maximum nitrogen flow may be restricted such that in the event of acatastrophic failure of the gas handling the maximum leak rate ofnitrogen into the lab should be less than 20% of the maximum safe flowrate. According to various embodiments an orifice having a diameter of1.4 to 1.45 mm may be used.

A source pressure sensor may be provided.

A source relief valve having a cracking pressure of 345 mbar may beprovided. The source relief valve may be arranged to prevent thepressure in the source from exceeding 0.5 bar in a single faultcondition. The gas flow rate through the source relief valve may bearranged so as not to be less than 2000 L/h at a differential pumpingpressure of 0.5 bar. A suitable valve is a Ham-Let® H-480-S-G-1/4-5 psivalve.

A cone restrictor may be provided to restrict the cone flow rate to 36L/hour for an input pressure of 7 bar. The cone restrictor may comprisea 0.114 mm orifice.

The desolvation flow may be restricted by a desolvation flow restrictorto a flow rate of 940 L/hour for an input pressure of 7 bar. Thedesolvation flow restrictor may comprise a 0.58 mm orifice.

A pinch valve may be provided which has a pilot operating pressure rangeof at least 4 to 7 bar gauge. The pinch valve may normally be open andmay have a maximum inlet operating pressure of at least 0.5 bar gauge.

When the instrument is requested to turn the API gas OFF, then controlsoftware may close the API gas valve, wait 2 seconds and then close thesource exhaust valve.

In the event of an API gas failure wherein the pressure switch opens(pressure <4 bar) then software control of the API gas may be disabledand the API gas valve may be closed. The system may then wait 2 secondsbefore closing the exhaust valve.

In order to turn the API gas ON a source pressure monitor may be turnedON except while a source pressure test is performed. An API gas ON orOFF request from software may be stored as an API Gas Request statewhich can either be ON or OFF. Further details are presented below:

API Gas Request state API Gas Control state API gas valve ON EnabledOpen ON Disabled Closed OFF Enabled Closed OFF Disabled Closed

FIG. 7C shows a flow diagram showing an instrument response to a userrequest to turn the API gas ON. A determination may be made as towhether or not software control of API gas is enabled. If softwarecontrol is not enabled, then the request may be refused. If softwarecontrol of API gas is enabled, then the open source exhaust valve may beopened. Then after a delay of 2 seconds the API gas valve may be opened.The pressure is then monitored. If the pressure is determined to bebetween 20-60 mbar, then a warning message may be communicated orissued. If the pressure is greater than 60 mbar, then then the API gasvalve may be closed. Then after a delay of 2 seconds the source exhaustvalve may be closed and a high exhaust pressure trip may occur.

A high exhaust pressure trip may be reset by running a source pressuretest.

According to various embodiments the API gas valve may be closed within100 ms of an excess pressure being sensed by the source pressure sensor.

FIG. 7D shows a flow diagram illustrating a source pressure test whichmay be performed according to various embodiments. The source pressuretest may be commenced and software control of fluidics may be disabledso that no fluid flows into the Electrospray probe 401.

Software control of the API gas may also be disabled i.e. the API isturned OFF. The pressure switch may then be checked. If the pressure isabove 4 bar for more than 1 second, then the API gas valve may beopened. However, if the pressure is less than 4 bar for more than 1second then the source pressure test may move to a failed state due tolow API gas pressure.

Assuming that the API gas valve is opened then the pressure may then bemonitored. If the pressure is in the range 18-100 mbar, then a warningmessage may be output indicating a possible exhaust problem. If thewarning status continues for more than 30 seconds, then the system mayconclude that the source pressure test has failed due to the exhaustpressure being too high.

If the monitored pressure is determined to be less than 18 mbar, thenthe source exhaust valve is closed.

The pressure may then again be monitored. If the pressure is less than200 mbar, then a warning message indicating a possible source leak maybe issued.

If the pressure is determined to be greater than 200 mbar, then the APIgas valve may be closed and the source exhaust valve may be opened i.e.the system looks to build pressure and to test for leaks. The system maythen wait 2 seconds before determining that the source pressure test ispassed.

If the source pressure test has been determined to have been passed,then the high pressure exhaust trip may be reset and software control offluidics may be enabled. Software control of the API gas may then beenabled and the source pressure test may then be concluded.

According to various embodiments the API gas valve may be closed within100 ms of an excess pressure being sensed by the source pressure sensor.

In the event of a source pressure test failure, the divert valveposition may be set to divert and the valve may be kept in this positionuntil the source pressure test is either passed or the test isover-ridden.

It is contemplated that the source pressure test may be over-ridden incertain circumstances. Accordingly, a user may be permitted to continueto use an instrument where they have assessed any potential risk asbeing acceptable. If the user is permitted to continue using theinstrument, then the source pressure test status message may still bedisplayed in order to show the original failure. As a result, a user maybe reminded of the continuing failed status so that the user maycontinually re-evaluate any potential risk.

In the event that a user requests a source pressure test over-ride thenthe system may reset a high pressure exhaust trip and then enablesoftware control of the divert valve. The system may then enablesoftware control of the API gas before determining that the sourcepressure test over-ride is complete.

The pressure reading used in the source pressure test and sourcepressure monitoring may include a zero offset correction.

The gas and fluidics control responsibility may be summarised asdetailed below:

Mode of operation Software Electronics Operate Gas and fluidics NonePower save Gas Fluidics Standby Gas Fluidics SPT/Failure None Gas andfluidics Vacuum loss None Gas and fluidics Gas fail state None Gas andfluidics Operate gas OFF Gas Fluidics

A pressure test may be initiated if a user triggers an interlock.

The instrument may operate in various different modes of operation. Ifthe turbo pump speed falls to less than 80% of maximum speed whilst inOperate, Over-pressure or Power save mode then the instrument may entera Standby state or mode of operation.

If the pressure in the Time of Flight vacuum chamber is greater than1×10−5 mbar and/or the turbo speed is less than 80% of maximum speed,then the instrument may be prevented from operating in an Operate modeof operation.

According to various embodiments the instrument may be operated in aPower save mode. In a Power save mode of operation the piston pump maybe stopped. If the instrument is switched into a Power save mode whilethe divert valve is in the LC position, then the divert valve may changeto a divert position. A Power save mode of operation may be consideredas being a default mode of operation wherein all back voltages are keptON, front voltages are turned OFF and gas is OFF.

If the instrument switches from a Power save mode of operation to anOperate mode of operation, then the piston pump divert valves may bereturned to their previous states i.e. their states immediately before aPower save mode of operation was entered.

If the Time of Flight region pressure rises above 1.5×10−5 mbar whilethe instrument is in an Operate mode of operation, then the instrumentmay enter an Over-pressure mode of operation or state.

If the Time of Flight pressure enters the range 1×10−8 to 1×10−5 mbarwhile the instrument is in an Over-pressure mode of operation, then theinstrument may enter an Operate mode of operation.

If the API gas pressure falls below its trip level while the instrumentis in an Operate mode of operation, then the instrument may enter a GasFail state or mode of operation. The instrument may remain in a Gas Failstate until both: (i) the API gas pressure is above its trip level; and(ii) the instrument is operated in either Standby or Power save mode.

According to an embodiment the instrument may transition from an Operatemode of operation to an Operate with Source Interlock Open mode ofoperation when the source cover is opened. Similarly, the instrument maytransition from an Operate with Source Interlock Open mode of operationto an Operate mode of operation when the source cover is closed.

According to an embodiment the instrument may transition from anOver-pressure mode of operation to an Over-pressure with SourceInterlock Open mode of operation when the source cover is opened.Similarly, the instrument may transition from an Over-pressure withSource Interlock Open mode of operation to an Over-pressure mode ofoperation when the source cover is closed.

The instrument may operate in a number of different modes of operationwhich may be summarised as follows:

API gas Mode of Analyser Front end Desolvation Source control operationvoltages voltages heater heater state Standby OFF OFF OFF ON EnabledOperate ON ON ON ON Enabled Power Save ON OFF OFF ON EnabledOver-pressure OFF ON ON ON Enabled Gas Fail ON OFF OFF ON DisabledOperate with ON OFF OFF OFF Disabled Source Interlock Over-pressure OFFOFF OFF OFF Disabled with Source interlock Not Pumped OFF OFF OFF OFFEnabled

Reference to front end voltages relates to voltages which are applied tothe Electrospray capillary electrode 402, the source offset, the sourceor first ion guide 301, aperture #1 (see FIG. 15A) and the quadrupoleion guide 302.

Reference to analyser voltages relates to all high voltages except thefront end voltages.

Reference to API gas refers to desolvation, cone and nebuliser gases.

Reference to Not Pumped refers to all vacuum states except pumped.

If any high voltage power supply loses communication with the overallsystem or a global circuitry control module, then the high voltage powersupply may be arranged to switch OFF its high voltages. The globalcircuitry control module may be arranged to detect the loss ofcommunication of any subsystem such as a power supply unit (“PSU”), apump or gauge etc.

According to various embodiments the system will not indicate its stateor mode of operation as being Standby if the system is unable to verifythat all subsystems are in a Standby state.

As is apparent from the above table, when the instrument is operated inan Operate mode of operation then all voltages are switched ON. When theinstrument transitions to operate in an Operate mode of operation thenthe following voltages are ON namely transfer lens voltages, ion guidevoltages, voltages applied to the first ion guide 301 and the capillaryelectrode 402. In addition, the desolvation gas and desolvation heaterare all ON.

If a serious fault were to develop then the instrument may switch to aStandby mode of operation wherein all voltages apart from the sourceheater provided in the ion block 802 are turned OFF and only a serviceengineer can resolve the fault. It will be understood that theinstrument may only be put into a Standby mode of operation whereinvoltages apart from the source heater in the ion block 802 are turnedOFF only if a serious fault occurs or if a service engineer specifiesthat the instrument should be put into a Standby mode operation. A useror customer may (or may not) be able to place an instrument into aStandby mode of operation.

Accordingly, in a Standby mode of operation all voltages are OFF and thedesolvation gas flow and desolvation heater 404 are all OFF. Only thesource heater in the ion block 802 may be left ON.

The instrument may be kept in a Power Save mode by default and may beswitched so as to operate in an Operate mode of operation wherein allthe relevant voltages and gas flows are turned ON. This approachsignificantly reduces the time taken for the instrument to be put into auseable state. When the instrument transitions to a Power Save mode ofoperation then the following voltages are ON—pusher electrode 305,reflectron 306, ion detector 307 and more generally the various Time ofFlight mass analyser 304 voltages.

The stability of the power supplies for the Time of Flight mass analyser304, ion detector 307 and reflectron 306 can affect the mass accuracy ofthe instrument. The settling time when turning ON or switching polarityon a known conventional instrument is around 20 minutes.

It has been established that if the power supplies are cold or have beenleft OFF for a prolonged period of time then they may require up to 10hours to warm up and stabilise. For this reason customers may beprevented from going into a Standby mode of operation which would switchOFF the voltages to the Time of Flight analyser 304 including thereflectron 306 and ion detector 307 power supplies.

On start-up the instrument may move to a Power save mode of operation asquickly as possible as this allows the power supplies the time they needto warm up whilst the instrument is pumping down. As a result, by thetime the instrument has reached the required pressure to carry outinstrument setup the power supplies will have stabilised thus reducingany concerns relating to mass accuracy.

According to various embodiments in the event of a vacuum failure in thevacuum chamber housing the Time of Flight mass analyser 304 then powermay be shut down or turned OFF to all the peripherals or sub-modulese.g. the ion source 300, first ion guide 301, the segmented quadrupolerod set ion guide 302, the transfer optics 303, the pusher electrode 305high voltage supply, the reflectron 306 high voltage supply and the iondetector 307 high voltage supply. The voltages are primarily all turnedOFF for reasons of instrument protection and in particular protectingsensitive components of the Time of Flight mass analyser 307 from highvoltage discharge damage.

It will be understood that high voltages may be applied to closelyspaced electrodes in the Time of Flight mass analyser 304 on theassumption that the operating pressure will be very low and hence therewill be no risk of sparking or electrical discharge effects.Accordingly, in the event of a serious vacuum failure in the vacuumchamber housing the Time of Flight mass analyser 304 then the instrumentmay remove power or switch power OFF to the following modules orsub-modules: (i) the ion source high voltage supply module; (ii) thefirst ion guide 301 voltage supply module; (iii) the quadrupole ionguide 302 voltage supply module; (iv) the high voltage pusher electrode305 supply module; (v) the high voltage reflectron 306 voltage supplymodule; and (vi) the high voltage detector 307 module. The instrumentprotection mode of operation is different to a Standby mode of operationwherein electrical power is still supplied to various power supplies ormodules or sub-modules. In contrast, in an instrument protection mode ofoperation power is removed to the various power supply modules by theaction of a global circuitry control module. Accordingly, if one of thepower supply modules were faulty it would still be unable in a faultcondition to turn voltages ON because the module would be denied powerby the global circuitry control module.

FIG. 8 shows a view of a mass spectrometer 100 according to variousembodiments in more detail. The mass spectrometer 100 may comprise afirst vacuum PCB interface 801 a having a first connector 817 a fordirectly connecting the first vacuum interface PCB 801 a to a firstlocal control circuitry module (not shown) and a second vacuum PCBinterface 801 b having a second connector 817 b for directly connectingthe second vacuum interface PCB 801 b to a second local controlcircuitry module (not shown).

The mass spectrometer 100 may further comprise a pumping or ion block802 which is mounted to a pumping block or thermal isolation stage (notviewable in FIG. 8). According to various embodiments one or more dowelsor projections 802 a may be provided which enable a source enclosure(not shown) to connect to and secure over and house the ion block 802.The source enclosure may serve the purpose of preventing a user frominadvertently coming into contact with any high voltages associated withthe Electrospray probe 402. A micro-switch or other form of interlockmay be used to detect opening of the source enclosure by a user in orderto gain source access whereupon high voltages to the ion source 402 maythen be turned OFF for user safety reasons.

Ions are transmitted via an initial or first ion guide 301, which maycomprise a conjoined ring ion guide, and then via a segmented quadrupolerod set ion guide 302 to a transfer lens or transfer optics arrangement303. The transfer optics 303 may be designed in order to provide ahighly efficient ion guide and interface into the Time of Flight massanalyser 304 whilst also reducing manufacturing costs.

Ions may be transmitted via the transfer optics 303 so that the ionsarrive in a pusher electrode assembly 305. The pusher electrode assembly305 may also be designed so as to provide high performance whilst at thesame time reducing manufacturing costs.

According to various embodiments a cantilevered Time of Flight stack 807may be provided. The cantilevered arrangement may be used to mount aTime of Flight stack or flight tube 807 and has the advantage of boththermally and electrically isolating the Time of Flight stack or flighttube 807. The cantilevered arrangement represents a significant designdeparture from conventional instruments and results in substantialimprovements in instrument performance.

According to an embodiment an alumina ceramic spacer and a plastic(PEEK) dowel may be used.

According to an embodiment when a lock mass is introduced and theinstrument is calibrated then the Time of Flight stack or flight tube807 will not be subjected to thermal expansion. The cantileveredarrangement according to various embodiments is in contrast to knownarrangements wherein both the reflectron 306 and the pusher assembly 305were mounted to both ends of a side flange. As a result conventionalarrangements were subjected to thermal impact.

Ions may be arranged to pass into a flight tube 807 and may be reflectedby a reflectron 306 towards an ion detector 811. The output from the iondetector 811 is passed to a pre-amplifier (not shown) and then to anAnalogue to Digital Converter (“ADC”) (also not shown).

The reflectron 306 is preferably designed so as to provide highperformance whilst also reducing manufacturing cost and improvingreliability.

As shown in FIG. 8 the various electrode rings and spacers whichcollectively form the reflectron subassembly may be mounted to aplurality of PEEK support rods 814. The reflectron subassembly may thenbe clamped to the flight tube 807 using one or more cotter pins 813. Asa result, the components of the reflectron subassembly are held undercompression which enables the individual electrodes forming thereflectron to be maintained parallel to each other with a high level ofprecision. According to various embodiments the components may be heldunder spring loaded compression.

The pusher electrode assembly 305 and the detector electronics or adiscrete detector module may be mounted to a common pusher plateassembly 1012. This is described in more detail below with reference toFIGS. 10A-10C.

The Time of Flight mass analyser 304 may have a full length cover 809which may be readily removed enabling extensive service access. The fulllength cover 809 may be held in place by a plurality of screws e.g. 5screws. A service engineer may undo the five screws in order to exposethe full length of the time of flight tube 807 and the reflectron 306.The mass analyser 304 may further comprise a removable lid 810 for quickservice access. In particular, the removable lid 810 may provide accessto a service engineer so that the service engineer can replace anentrance plate 1000 as shown in FIG. 10C. In particular, the entranceplate 1000 may become contaminated due to ions impacting upon thesurface of the entrance plate 1000 resulting in surface charging effectsand potentially reducing the efficiency of ion transfer from thetransfer optics 303 into a pusher region adjacent the pusher electrode305.

A SMA (SubMiniature version A) connector or housing 850 is shown but anAC coupler 851 is obscured from view.

FIG. 9 shows a pusher plate assembly 912, flight tube 907 and reflectronstack 908. A pusher assembly 905 having a pusher shielding cover is alsoshown. The flight tube 907 may comprise an extruded or plastic flighttube. The reflectron 306 may utilise fewer ceramic components thanconventional reflectron assemblies thereby reducing manufacturing cost.According to various embodiments the reflectron 306 may make greater useof PEEK compared with conventional reflectron arrangements.

A SMA (SubMiniature version A) connector or housing 850 is shown but anAC coupler 851 is obscured from view.

According to other embodiments the reflectron 306 may comprise a bondedreflectron. According to another embodiment the reflectron 306 maycomprise a metalised ceramic arrangement. According to anotherembodiment the reflectron 306 may comprise a jigged then bondedarrangement.

According to alternative embodiments instead of stacking, mounting andfixing multiple electrodes or rings, a single bulk piece of aninsulating material such as a ceramic may be provided. Conductivemetalised regions on the surface may then be provided with electricalconnections to these regions so as to define desired electric fields.For example, the inner surface of a single piece of cylindrical shapedceramic may have multiple parallel metalised conductive rings depositedas an alternative method of providing potential surfaces as a result ofstacking multiple individual rings as is known conventionally. The bulkceramic material provides insulation between the different potentialsapplied to different surface regions. The alternative arrangementreduces the number of components thereby simplifying the overall design,improving tolerance build up and reducing manufacturing cost.Furthermore, it is contemplated that multiple devices may be constructedthis way and may be combined with or without grids or lenses placed inbetween. For example, according to one embodiment a first grid electrodemay be provided, followed by a first ceramic cylindrical element,followed by a second grid electrode followed by a second ceramiccylindrical element.

FIG. 10A shows a pusher plate assembly 1012 comprising three partsaccording to various embodiments. According to an alternative embodimenta monolithic support plate 1012 a may be provided as shown in FIG. 10B.The monolithic support plate 1012 a may be made by extrusion. Thesupport plate 1012 a may comprise a horse shoe shaped bracket having aplurality (e.g. four) fixing points 1013. According to an embodimentfour screws may be used to connect the horse shoe shaped bracket to thehousing of the mass spectrometer and enable a cantilevered arrangementto be provided. The bracket may be maintained at a voltage which may bethe same as the Time of Flight voltage i.e. 4.5 kV. By way of contrast,the mass spectrometer housing may be maintained at ground voltage i.e.0V.

FIG. 10C shows a pusher plate assembly 1012 having mounted thereon apusher electrode assembly and an ion detector assembly 1011. An entranceplate 1000 having an ion entrance slit or aperture is shown.

The pusher electrode may comprise a double grid electrode arrangementhaving a 2.9 mm field free region between a second and third gridelectrode as shown in more detail in FIG. 16C.

FIG. 11 shows a flow diagram illustrating various processes which mayoccur once a start button has been pressed.

According to an embodiment when the backing pump is turned ON a checkmay be made that the pressure is <32 mbar within three minutes ofoperation. If a pressure of <32 mbar is not achieved or establishedwithin three minutes of operation, then a rough pumping timeout (amber)warning may be issued.

FIG. 12A shows the three different pumping ports of the turbo molecularpump according to various embodiments. The first pumping port H1 may bearranged adjacent the segmented quadrupole rod set 302. The secondpumping port H2 may be arranged adjacent a first lens set of thetransfer lens arrangement 303. The third pumping port (which may bereferred to either as the H port or the H3 port) may be directlyconnected to Time of Flight mass analyser 304 vacuum chamber.

FIG. 12B shows from a different perspective the first pumping port H1and the second pumping port H2. The user clamp 535 which is mounted inuse to the ion block 802 is shown. The first ion guide 301 and thequadrupole rod set ion guide 302 are also indicated. A nebuliser or conegas input 1201 is also shown. An access port 1251 is provided formeasuring pressure in the source. A direct pressure sensor is provided(not fully shown) for measuring the pressure in the vacuum chamberhousing the initial ion guide 301 and which is in fluid communicationwith the internal volume of the ion block 802. An elbow fitting 1250 andan over pressure relief valve 1202 are also shown.

One or more part-rigid and part-flexible printed circuit boards (“PCBs”)may be provided. According to an embodiment a printed circuit board maybe provided which comprises a rigid portion 1203 a which is located atthe exit of the quadrupole rod set region 302 and which is optionally atleast partly arranged perpendicular to the optic axis or direction ofion travel through the quadrupole rod set 302. An upper or other portionof the printed circuit board may comprise a flexible portion 1203 b sothat the flexible portion 1203 b of the printed circuit board has astepped shape in side profile as shown in FIG. 12B.

According to various embodiments the H1 and H2 pumping ports maycomprise EMC splinter shields.

It is also contemplated that the turbo pump may comprise dynamic EMCsealing of the H or H3 port. In particular, an EMC mesh may be providedon the H or H3 port.

FIG. 13 shows in more detail the transfer lens arrangement 303 and showsa second differential pumping aperture (Aperture #2) 1301 whichseparates the vacuum chamber housing the segmented quadrupole rod set302 from first transfer optics which may comprise two accelerationelectrodes. The relative spacing of the lens elements, their internaldiameters and thicknesses according to an embodiment are shown. However,it should be understood that the relative spacing, size of apertures andthicknesses of the electrodes or lens elements may be varied from thespecific values indicated in FIG. 13.

The region upstream of the second aperture (Aperture #2) 1301 may be influid communication with the first pumping port H1 of the turbo pump. Athird differential pumping aperture (Aperture #3) 1302 may be providedbetween the first transfer optics and second transfer optics.

The region between the second aperture (Aperture #2) 1301 and the thirdaperture (Aperture #3) 1302 may be in fluid communication with thesecond pumping port H2 of the turbo pump.

The second transfer optics which is arranged downstream of the thirdaperture 1302 may comprises a lens arrangement comprising a firstelectrode which is electrical connection with the third aperture(Aperture #3) 1302. The lens arrangement may further comprise a second(transport) lens and a third (transport/steering) lens. Ions passingthrough the second transfer optics then pass through a tube lens beforepassing through an entrance aperture 1303. Ions passing through theentrance aperture 1303 pass through a slit or entrance plate 1000 into apusher electrode assembly module.

The lens apertures after Aperture #3 1302 may comprise horizontal slotsor plates. Transport 2/steering lens may comprise a pair of half plates.

The entrance plate 1000 may be arranged to be relatively easilyremovable by a service engineer for cleaning purposes.

One or more of the lens plates or electrodes which form a part of theoverall transfer optics 303 may be manufactured by introducing anovercompensation etch of 5%. An additional post etch may also beperformed. Conventional lens plates or electrodes may have a relativelysharp edge as a result of the manufacturing process. The sharp edges cancause electrical breakdown with conventional arrangements. Lens platesor electrodes which may be fabricated according to various embodimentsusing an overcompensation etching approach and/or additional post etchmay have significantly reduced sharp edges which reduces the potentialfor electrical breakdown as well as reducing manufacturing cost.

FIG. 14A shows details of a known internal vacuum configuration and FIG.14B shows details of a new internal vacuum configuration according tovarious embodiments.

A conventional arrangement is shown in FIG. 14A wherein the connection700 from the backing pump to the first vacuum chamber of a massspectrometer makes a T-connection into the turbo pump when backingpressure is reached. However, this requires multiple components so thatmultiple separate potential leak points are established. Furthermore,the T-connection adds additional manufacturing and maintenance costs.

FIG. 14B shows an embodiment wherein the backing pump 700 is onlydirectly connected to the first vacuum chamber i.e. the T-connection isremoved. A separate connection 1401 is provided between the first vacuumchamber and the turbo pump.

A high voltage supply feed through 1402 is shown which provides a highvoltage (e.g. 1.1 kV) to the pusher electrode module 305. An upperaccess panel 810 is also shown. A Pirani pressure gauge 701 is arrangedto measure the vacuum pressure in the vacuum chamber housing the firstion guide 301. An elbow gas fitting 1250 is shown through whichdesolvation/cone gas may be supplied. With reference to FIG. 14B, behindthe elbow gas fitting 1250 is shown the over pressure relief valve 1202and behind the over pressure relief valve 1202 is shown a further elbowfitting which enables gas pressure from the source to be directlymeasured.

FIG. 15A shows a schematic of the ion block 802 and source or first ionguide 301. According to an embodiment the source or first ion guide 301may comprise six initial ring electrodes followed by 38-39 open ring orconjoined electrodes. The source or first ion guide 301 may concludewith a further 23 rings. It will be appreciated, however, that theparticular ion guide arrangement 301 shown in FIG. 15A may be varied ina number of different ways. In particular, the number of initial ringelectrodes (e.g. 6) and/or the number of final stage (e.g. 23) ringelectrodes may be varied. Similarly, the number of intermediate openring or conjoined ring electrodes (e.g. 38-39) may also be varied.

It should be understood that the various dimensions illustrated on FIG.15A are for illustrative purposes only and are not intended to belimiting. In particular, embodiments are contemplated wherein the sizingof ring and/or conjoined ring electrodes may be different from thatshown in FIG. 15A.

A single conjoined ring electrode is also shown in FIG. 15A.

According to various embodiment the initial stage may comprise 0-5,5-10, 10-15, 15-20, 20-25, 25-30, 30-35, 35-40, 40-45, 45-50 or >50 ringor other shaped electrodes. The intermediate stage may comprise 0-5,5-10, 10-15, 15-20, 20-25, 25-30, 30-35, 35-40, 40-45, 45-50 or >50 openring, conjoined ring or other shaped electrodes. The final stage maycomprise 0-5, 5-10, 10-15, 15-20, 20-25, 25-30, 30-35, 35-40, 40-45,45-50 or >50 ring or other shaped electrodes.

The ring electrodes and/or conjoined ring electrodes may have athickness of 0.5 mm and a spacing of 1.0 mm. However, the electrodes mayhave other thicknesses and/or different spacings.

Aperture #1 plate may comprise a differential pumping aperture and mayhave a thickness of 0.5 mm and an orifice diameter of 1.50 mm. Again,these dimensions are illustrative and are not intended to be limiting.

A source or first ion guide RF voltage may be applied to all Step 1 andStep 2 electrodes in a manner as shown in FIG. 15A. The source or firstion guide RF voltage may comprise 200 V peak-to-peak at 1.0 MHz.

Embodiments are contemplated wherein a linear voltage ramp may beapplied to Step 2 Offset (cone).

The Step 2 Offset (cone) voltage ramp duration may be made equal to thescan time and the ramp may start at the beginning of a scan. Initial andfinal values for the Step 2 Offset (cone) ramp may be specified over thecomplete range of Step 2 Offset (cone).

According to various embodiments a resistor chain as shown in FIG. 15Bmay be used to produce a linear axial field along the length of Step 1.Adjacent ring electrodes may have opposite phases of RF voltage appliedto them.

A resistor chain may also be used to produce a linear axial field alongthe length of Step 2 as shown in FIG. 15C. Adjacent ring electrodes mayhave opposite phases of RF voltage applied to them.

Embodiments are contemplated wherein the RF voltage applied to some orsubstantially all the ring and conjoined ring electrodes forming thefirst ion guide 301 may be reduced or varied in order to perform anon-mass to charge ratio specific attenuation of the ion beam. Forexample, as will be appreciated, with a Time of Flight mass analyser 304the ion detector 307 may suffer from saturation effects if an intenseion beam is received at the pusher electrode 305. Accordingly, theintensity of the ion beam arriving adjacent the pusher electrode 305 canbe controlled by varying the RF voltage applied to the electrodesforming the first ion guide 301. Other embodiments are also contemplatedwherein the RF voltage applied to the electrodes forming the second ionguide 302 may additionally and/or alternatively be reduced or varied inorder to attenuate the ion beam or otherwise control the intensity ofthe ion beam. In particular, it is desired to control the intensity ofthe ion beam as received in the pusher electrode 305 region.

FIG. 16A shows in more detail the quadrupole ion guide 302 according tovarious embodiments. The quadrupole rods may have a diameter of 6.0 mmand may be arranged with an inscribed radius of 2.55 mm. Aperture #2plate which may comprise a differential pumping aperture may have athickness of 0.5 mm and an orifice diameter of 1.50 mm. The variousdimensions shown in FIG. 16A are intended to be illustrative andnon-limiting.

The ion guide RF amplitude applied to the rod electrodes may becontrollable over a range from 0 to 800 V peak-to-peak.

The ion guide RF voltage may have a frequency of 1.4 MHz. The RF voltagemay be ramped linearly from one value to another and then held at thesecond value until the end of a scan.

As shown in FIG. 16B, the voltage on the Aperture #2 plate may be pulsedin an Enhanced Duty Cycle mode operation from an Aperture 2 voltage toan Aperture 2 Trap voltage. The extract pulse width may be controllableover the range 1-25 μs. The pulse period may be controllable over therange 22-85 μs. The pusher delay may be controllable over the range 0-85μs.

FIG. 16C shows in more detail the pusher electrode arrangement. The gridelectrodes may comprise Ø 60 parallel wire with 92% transmission (Ø0.018 mm parallel wires at 0.25 mm pitch). The dimensions shown areintended to be illustrative and non-limiting.

FIG. 16D shows in more detail the Time of Flight geometry. The regionbetween the pusher first grid, reflectron first grid and the detectorgrid preferably comprises a field free region. The position of the iondetector 307 may be defined by the ion impact surface in the case of aMagneTOF® ion detector or the surface of the front MCP in the case of aMCP detector.

The reflectron ring lenses may be 5 mm high with 1 mm spaces betweenthem. The various dimensions shown in FIG. 16D are intended to beillustrative and non-limiting.

According to various embodiments the parallel wire grids may be alignedwith their wires parallel to the instrument axis. It will be understoodthat the instrument axis runs through the source or first ion guide 301through to the pusher electrode assembly 305.

A flight tube power supply may be provided which may have an operatingoutput voltage of either +4.5 kV or −4.5 kV depending on the polarityrequested.

A reflectron power supply may be provided which may have an operatingoutput voltage ranging from 1625±100 V or −1625±100 V depending on thepolarity requested.

FIG. 16E is a schematic of the Time of Flight wiring according to anembodiment. The various resistor values, voltages, currents andcapacitances are intended to be illustrative and non-limiting.

According to various embodiments a linear voltage gradient may bemaintained along the length of the reflectron 306. In a particularembodiment a reflectron clamp plate may be maintained at the reflectronvoltage.

An initial electrode and associated grid 1650 of the reflectron 306 maybe maintained at the same voltage or potential as the flight tube 807and the last electrode of the pusher electrode assembly 305. Accordingto an embodiment the initial electrode and associated grid 1650 of thereflectron 306, the flight tube 807 and the last electrode andassociated grid of the pusher electrode assembly 305 may be maintainedat a voltage or potential of e.g. 4.5 kV of opposite polarity to theinstrument or mode of operation. For example, in positive ion mode theinitial electrode and associated grid 1650 of the reflectron 306, theflight tube 807 and the last electrode and associated grid of the pusherelectrode assembly 305 may be maintained at a voltage or potential of−4.5 kV.

The second grid electrode 1651 of the reflectron 306 may be maintainedat ground or 0V.

The final electrode 1652 of the reflectron 306 may be maintained at avoltage or potential of 1.725 kV of the same polarity as the instrument.For example, in positive ion mode the final electrode 1652 of thereflectron 306 may be maintained at a voltage or potential of +1.725 kV.

It will be understood by those skilled in the art that the reflectron306 acts to decelerate ions arriving from the time of flight region andto redirect the ions back out of the reflectron 306 in the direction ofthe ion detector 307.

The voltages and potentials applied to the reflectron 306 according tovarious embodiments and maintaining the second grid electrode 1651 ofthe reflectron at ground or 0V is different from the approach adopted inconventional reflectron arrangements.

The ion detector 307 may always be maintained at a positive voltagerelative to the flight tube voltage or potential. According to anembodiment the ion detector 307 may be maintained at a +4 kV voltagerelative to the flight tube.

Accordingly, in a positive ion mode of operation if the flight tube ismaintained at an absolute potential or voltage of −4.5 kV then thedetector may be maintained at an absolute potential or voltage of −0.5kV.

FIG. 16F shows the DC lens supplies according to an embodiment. It willbe understood that Same polarity means the same as instrument polarityand that Opposite polarity means opposite to instrument polarity.Positive means becomes more positive as the control value is increasedand Negative means becomes more negative as the control value isincreased. The particular values shown in FIG. 16F are intended to beillustrative and non-limiting.

FIG. 16G shows a schematic of an ion detector arrangement according tovarious embodiments. The detector grid may form part of the ion detector307. The ion detector 307 may, for example, comprise a MagneTOF® DM490ion detector. The inner grid electrode may be held at a voltage of +1320V with respect to the detector grid and flight tube via a series ofzener diodes and resistors. The ion detector 307 may be connected to aSMA 850 and an AC coupler 851 which may both be provided within orinternal to the mass analyser housing or within the mass analyser vacuumchamber. The AC coupler 851 may be connected to an externally locatedpreamp which in turn may be connected to an Analogue to DigitalConverter (“ADC”) module.

FIG. 16H shows a potential energy diagram for an instrument according tovarious embodiments. The potential energy diagram represents aninstrument in positive ion mode. In negative ion mode all the polaritiesare reversed except for the detector polarity. The particularvoltages/potentials shown in FIG. 16H are intended to be illustrativeand non-limiting.

The instrument may include an Analogue to Digital Converter (“ADC”)which may be operated in peak detecting ADC mode with fixed peakdetecting filter coefficients. The ADC may also be run in a Time toDigital Converter (“TDC”) mode of operation wherein all detected ionsare assigned unit intensity. The acquisition system may support a scanrate of up to 20 spectra per second. A scan period may range from 40 msto 1 μs. The acquisition system may support a maximum input event rateof 7×106 events per second.

According to various embodiments the instrument may have a mass accuracyof 2-5 ppm may have a chromatographic dynamic range of 104. Theinstrument may have a high mass resolution with a resolution in therange 10000-15000 for peptide mapping. The mass spectrometer 100 ispreferably able to mass analyse intact proteins, glycoforms and lysinevariants. The instrument may have a mass to charge ratio range ofapprox. 8000.

Instrument testing was performed with the instrument fitted with an ESIsource 401. Sample was infused at a flow rate of 400 mL/min. Mass rangewas set to m/z 1000. The instrument was operated in positive ion modeand high resolution mass spectral data was obtained.

According to various embodiments the instrument may have a singleanalyser tune mode i.e. no sensitivity and resolution modes.

According to various embodiments the resolution of the instrument may bein the range 10000-15000 for high mass or mass to charge ratio ions suchas peptide mapping applications.

The resolution may be determined by measuring on any singly charged ionhaving a mass to charge ratio in the range 550-650.

The resolution of the instrument may be around 5500 for low mass ions.The resolution of instrument for low mass ions may be determined bymeasuring on any singly charged ion having a mass to charge ratio in therange 120-150.

According to various embodiments the instrument may have a sensitivityin MS positive ion mode of approx. 11,000 counts/second. The massspectrometer 100 may have a mass accuracy of approx. 2-5 ppm

Mass spectral data obtained according to various embodiments wasobserved as having reduced in-source fragmentation compared withconventional instruments. Adducts are reduced compared with conventionalinstruments. The mass spectral data also has cleaner valleys (<20%) formAb glycoforms.

As disclosed in US 2015/0076338 (Micromass), the contents of which areincorporated herein by reference, the instrument according to variousembodiment may comprise a plurality of discrete functional modules. Thefunctional modules may comprise, for example, electrical, mechanical,electromechanical or software components. The modules may beindividually addressable and may be connected in a network. A schedulermay be arranged to introduce discrete packets of instructions to thenetwork at predetermined times in order to instruct one or more modulesto perform various operations. A clock may be associated with thescheduler.

The functional modules may be networked together in a hierarchy suchthat the highest tier comprises the most time-critical functionalmodules and the lowest tier comprises functional modules which are theleast time time-critical. The scheduler may be connected to the networkat the highest tier.

For example, the highest tier may comprise functional modules such as avacuum control system, a lens control system, a quadrupole controlsystem, an electrospray module, a Time of Flight module and an ion guidemodule. The lowest tier may comprise functional modules such as powersupplies, vacuum pumps and user displays.

The mass spectrometer 100 according to various embodiments may comprisemultiple electronics modules for controlling the various elements of thespectrometer. As such, the mass spectrometer may comprise a plurality ofdiscrete functional modules, each operable to perform a predeterminedfunction of the mass spectrometer 100, wherein the functional modulesare individually addressable and connected in a network and furthercomprising a scheduler operable to introduce discrete packets ofinstructions to the network at predetermined times in order to instructat least one functional module to perform a predetermined operation.

The mass spectrometer 100 may comprise an electronics module forcontrolling (and for supplying appropriate voltage to) one or more oreach of: (i) the source; (ii) the first ion guide; (iii) the quadrupoleion guide; (iv) the transfer optics; (v) the pusher electrode; (vi) thereflectron; and (vii) the ion detector.

This modular arrangement may allow the mass spectrometer to bereconfigured straightforwardly. For example, one or more differentfunctional elements of the spectrometer may be removed, introduced orchanged, and the spectrometer may be configured to automaticallyrecognised which elements are present and to configure itselfappropriately.

The instrument may allow for a schedule of packets to be sent onto thenetwork at specific times and intervals during an acquisition. Thisreduces or alleviates the need for a host computer system with a realtime operating system to control aspects of the data acquisition. Theuse of packets of information sent to individual functional modules alsoreduces the processing requirements of a host computer.

The modular nature conveniently allows flexibility in the design and/orreconfiguring of a mass spectrometer. According to various embodimentsat least some of the functional modules may be common across a range ofmass spectrometers and may be integrated into a design with minimalreconfiguration of other modules. Accordingly, when designing a new massspectrometer, wholesale redesign of all the components and a bespokecontrol system are not necessary. A mass spectrometer may be assembledby connecting together a plurality of discrete functional modules in anetwork with a scheduler.

Furthermore, the modular nature of the mass spectrometer 100 accordingto various embodiments allows for a defective functional module to bereplaced easily. A new functional module may simply be connected to theinterface. Alternatively, if the control module is physically connectedto or integral with the functional module, both can be replaced.

Various embodiments are directed to a drive unit for driving anacceleration electrode of a mass spectrometer, the drive unit comprisinga power converter comprising a switching element, and pulsing circuitryoperable to form electrical output pulses from an output of the powerconverter so as to form output pulses suitable for driving anacceleration electrode of a mass spectrometer. The drive unit isconfigured such that (e.g. comprises control circuitry configured suchthat) the switching element is operated in synchronism with the pulsingcircuitry.

Various embodiments are directed to a mass spectrometer comprising apower converter that is controlled (based on a feedforward signal) basedon (a change to) the input voltage to the power converter and/or basedon a change to a desired voltage pulse parameter.

Various embodiments are directed to a drive unit for driving anacceleration electrode of a mass spectrometer, the drive unit comprisinga power converter configured to convert an input voltage to an outputvoltage and pulsing circuitry operable to form electrical output pulsesfrom an output of the power converter so as to form output pulsessuitable for driving an acceleration electrode of a mass spectrometer.The drive unit further comprises control circuitry configured such thatthe power converter is controlled based on the input voltage and/orbased on a prediction of the effect on the output voltage of a change toan operational parameter.

Various embodiments are directed to a mass spectrometer comprising thedrive unit, and a Time of Flight (ToF) mass analyser comprising anacceleration electrode, wherein electrical output pulses produced by thedrive unit are supplied to the acceleration electrode. In particularembodiments, the “ToF” mass analyser may be an orthogonal acceleration“ToF” mass analyser.

According to various embodiments, the drive unit is operable to generateoutput pulses suitable for causing ions to be accelerated away from theacceleration electrode when the output pulses are supplied to theacceleration electrode. It will be appreciated that in such embodiments,the drive unit operates as a “pusher drive unit”, and the accelerationelectrode comprises a “pusher electrode”. However, the drive unit mayalso or instead be operable to generate output pulses suitable forcausing ions to be accelerated towards the acceleration electrode whenthe output pulses are supplied to the acceleration electrode. It will beappreciated that in such embodiments, the drive unit operates as a“puller drive unit”, and the acceleration electrode comprises a “pullerelectrode”.

Thus, according to various embodiments, the drive unit is a pusherand/or puller drive unit, and the acceleration electrode is a pusherand/or puller electrode. Various embodiments herein are described withreference to a pusher drive unit and a pusher electrode. However, itwill be appreciated that such embodiments are, where appropriate,equally applicable to a puller drive unit and a puller electrode,mutatis mutandis.

FIGS. 17A and 17B show schematically various elements of a “ToF” massspectrometer 10 according to various embodiments comprising a drive unit11 (pusher drive unit) and a “ToF” mass analyser 12 comprising anacceleration electrode 14 (pusher stack). According to variousembodiments, the mass spectrometer 10 is controlled by master controller13. Various elements (operational units) of the mass spectrometer 10 maybe powered by master power supply 15 (system low-voltage DC powersupply).

The mass spectrometer 10 may comprise an analogue to digital converter(ADC) unit 16, which may be configured to digitise and record signalsreceived from a detector of the “ToF” mass analyser 12. As illustratedin FIGS. 17A and 17B, the (pusher) drive unit 11 may generate and sendtrigger signals to the ADC unit 16 to synchronise a start time of theADC unit 16 recording a detector signal with each output pulse generatedby the (pusher) drive unit 11.

The master power supply 15 can be any suitable power supply. Inparticular embodiments, the master power supply 15 supplies DC power tovarious components (operational units) of the mass spectrometer 10, suchas the (pusher) drive unit 11 and/or the master controller 13 and/or theADC unit 16 and/or one or more heaters 17 (as shown, for example, inFIG. 17B). The master power supply 15 may be a mains AC-DC power supplyunit (PSU). As illustrated in FIGS. 17A and 17B, the master power supply15 may be configured to supply low-voltage (e.g. 24V±5%) DC electricalpower to the various components (operational units) of the spectrometer10.

The one or more heaters 17 may be an ion source heater and/or adesolvation heater 404, e.g. as described above.

The master controller 13 may be configured to control the operation ofthe spectrometer 10, e.g. in the manner of the various embodimentsdescribed herein. Thus, the master controller 13 may cause the (pusher)drive unit 11 to generate the output pulses for supplying to theacceleration (pusher) electrode 14, in the manner of the variousembodiments described herein.

The master controller may comprise a suitable processor such as afield-programmable gate array (FPGA).

According to various embodiments, the (pusher) drive unit 11 comprises,and is enclosed by, a housing. The housing may include a suitable(conductive) chassis. The housing may be constructed of a metallicmaterial, such as aluminium. The (pusher) drive unit 11 housing may bemountable on a housing of the “ToF” mass analyser 12, e.g. using asuitable bracket.

The (pusher) drive unit 11 may comprise an output conductive pin. Theconductive pin may be suitable for supplying output pulses produced bythe drive unit 11 to the acceleration (pusher) electrode 14 of the “ToF”mass analyser 12, e.g. when the (pusher) drive unit 11 is mounted on thehousing of the “ToF” analyser 12. The conductive pin may be springloaded.

The drive unit 11 may further comprise suitable warning indicators, suchas one or more LEDs, to indicate when power is being supplied to the(pusher) drive unit 11 (by the master power supply 15), such that highvoltages may be present.

FIG. 18 shows in more detail the Time of Flight (“ToF”) mass analyser 12according to various embodiments. The analyser 12 may be connected toone or more upstream stages 21 of the mass spectrometer 10. Ions may besupplied to the mass analyser 12 via the one or more upstream stages 21.

The one or more upstream stages 21 may include any one or morecomponents of a mass spectrometer. For example, the one or more upstreamstages 21 may include any one or more of: (i) an ion source; (ii) one ormore ion guides; (iii) a mass or mass to charge ratio separator orfilter; (iv) one or more ion mobility separation devices; (v) one ormore Field Asymmetric Ion Mobility Spectrometer devices; (vi) one ormore ion traps or one or more ion trapping regions; (vii) one or morecollision, fragmentation or reaction cells; (viii) a device or ion gatefor pulsing ions; (ix) a device for converting a substantiallycontinuous ion beam into a pulsed ion beam; and (x) a chromatography orother separation device.

The ion source may comprise any suitable ion source. For example, theion source may be selected from the group consisting of: (i) anElectrospray ionisation (“ESI”) ion source; (ii) an Atmospheric PressurePhoto Ionisation (“APPI”) ion source; (iii) an Atmospheric PressureChemical Ionisation (“APCI”) ion source; (iv) a Matrix Assisted LaserDesorption Ionisation (“MALDI”) ion source; (v) a Laser DesorptionIonisation (“LDI”) ion source; (vi) an Atmospheric Pressure Ionisation(“API”) ion source; (vii) a Desorption Ionisation on Silicon (“DIOS”)ion source; (viii) an Electron Impact (“EI”) ion source; (ix) a ChemicalIonisation (“CI”) ion source; (x) a Field Ionisation (“FI”) ion source;(xi) a Field Desorption (“FD”) ion source; (xii) an Inductively CoupledPlasma (“ICP”) ion source; (xiii) a Fast Atom Bombardment (“FAB”) ionsource; (xiv) a Liquid Secondary Ion Mass Spectrometry (“LSIMS”) ionsource; (xv) a Desorption Electrospray Ionisation (“DESI”) ion source;(xvi) a Nickel-63 radioactive ion source; (xvii) an Atmospheric PressureMatrix Assisted Laser Desorption Ionisation ion source; (xviii) aThermospray ion source; (xix) an Atmospheric Sampling Glow DischargeIonisation (“ASGDI”) ion source; (xx) a Glow Discharge (“GD”) ionsource; (xxi) an Impactor ion source; (xxii) a Direct Analysis in RealTime (“DART”) ion source; (xxiii) a Laserspray Ionisation (“LSI”) ionsource; (xxiv) a Sonicspray Ionisation (“SSI”) ion source; (xxv) aMatrix Assisted Inlet Ionisation (“MAII”) ion source; (xxvi) a SolventAssisted Inlet Ionisation (“SAII”) ion source; (xxvii) a DesorptionElectrospray Ionisation (“DESI”) ion source; (xxviii) a Laser AblationElectrospray Ionisation (“LAESI”) ion source; and (xxix) SurfaceAssisted Laser Desorption Ionisation (“SALDI”).

The mass filter may comprise any suitable mass filter. For example, themass filter may be selected from the group consisting of: (i) aquadrupole mass filter; (ii) a 2D or linear quadrupole ion trap; (iii) aPaul or 3D quadrupole ion trap; (iv) a Penning ion trap; (v) an iontrap; (vi) a magnetic sector mass filter; (vii) a Time of Flight massfilter; and (viii) a Wien filter.

The ion source may comprise a chromatography or other separation deviceupstream of the ion source. The chromatography or other separationdevice may comprise any suitable chromatography or other separationdevice. For example, the chromatography or other separation device maycomprise a liquid chromatography or gas chromatography device.

Alternatively, the separation device may comprise: (i) a CapillaryElectrophoresis (“CE”) separation device; (ii) a CapillaryElectrochromatography (“CEC”) separation device; (iii) a substantiallyrigid ceramic-based multilayer microfluidic substrate (“ceramic tile”)separation device; or (iv) a supercritical fluid chromatographyseparation device.

The spectrometer 10 may be operated in various modes of operationincluding, for example, a mass spectrometry (“MS”) mode of operation; atandem mass spectrometry (“MS/MS”) mode of operation; a mode ofoperation in which parent or precursor ions are alternatively fragmentedor reacted so as to produce fragment or product ions, and not fragmentedor reacted or fragmented or reacted to a lesser degree; a MultipleReaction Monitoring (“MRM”) mode of operation; a Data Dependent Analysis(“DDA”) mode of operation; a Data Independent Analysis (“DIA”) mode ofoperation; a Quantification mode of operation; and/or an Ion MobilitySpectrometry (“IMS”) mode of operation.

As illustrated in FIG. 18, the mass analyser 12 may comprise anacceleration (pusher) electrode 14, an acceleration region 22, a fieldfree or drift region 23, and an ion detector 24 arranged at the exitregion of the field free or drift region 23. FIG. 18 also shows the(pusher) drive unit 11 and the circuitry 25 configured to supply theoutput pulses of the drive unit 11 to the acceleration (pusher)electrode 14 of the mass analyser 12, according to various embodiments.

It should be noted here that FIG. 18 is merely schematic, and that otherTime of Flight (“ToF”) mass analyser arrangements, such as a reflectronarrangement, may be used. Thus, although not shown in FIG. 18, invarious embodiments the mass analyser 12 may also comprise a reflectron,in which case the detector 24 may be located adjacent the accelerationelectrode 14.

Ions formed in the one or more upstream stages 21 of the mass analyser12 may be arranged to enter the acceleration region 22 where they may bedriven into the field free or drift region 23 by application of anoutput pulse generated by (pusher) drive unit 11 to the acceleration(pusher) electrode 14.

The ions may be accelerated to a velocity determined by the energyimparted by the output pulse and the mass to charge ratio of the ions.Ions having a relatively low mass to charge ratio achieve a relativelyhigh velocity and reach the ion detector 24 prior to ions having arelatively high mass to charge ratio.

Ions may arrive at the ion detector 24 after a time determined by theirvelocity and the distance travelled, which enables the mass to chargeratio of the ions to be determined. Each ion or groups of ions arrivingat the detector 24 is sampled by the detector 24, and the signal fromthe detector 24 may be digitised using the ADC 16. A processor may thendetermine a value indicative of the time of flight and/or mass-to-chargeratio (“m/z”) of the ion or group of ions. Data for multiple ions may becollected and combined to generate a Time of Flight (“ToF”) spectrumand/or a mass spectrum.

According to various embodiments, for each ion or group of ions arrivingat the detector 24, the detector 24 will produce one or more signals,which may then be digitised, e.g. by the ADC 16, and converted intotime-intensity pairs, i.e. data values comprising a time-of-flight valuetogether with an intensity value. In these embodiments, multiple suchtime-intensity pairs may be collected and combined to generate a Time ofFlight (“ToF”) spectrum and/or a mass spectrum.

Thus, according to various embodiments the Time of Flight (“ToF”) massanalyser 12 is configured to cause ions to be accelerated into the fieldfree or drift region 23 as a result of an output pulse being supplied tothe acceleration electrode 14.

FIG. 19 is a schematic diagram of the (pusher) drive unit 11 accordingto various embodiments. The drive unit 11 comprises a power converter 31(isolated step-up converter), pulsing circuitry (comprising a pulserswitch 33), and control circuitry 32. FIG. 19 also shows theacceleration (pusher) electrode 14 (pusher plate) and circuitry 25configured to supply the output pulses to the acceleration (pusher)electrode 14, which may comprise one or more damping resistors 36.

According to various embodiments, high voltage pulses of an outputsupplied by the power converter 31 are formed by switching a pulserswitch 33 of the pulsing circuitry, and the so-formed output pulses aresupplied to acceleration (pusher) electrode 14 inside a vacuum region ofthe “ToF” analyser 12, e.g. via a vacuum feedthrough 37. Each outputpulse may generate an electric field at the acceleration (pusher)electrode 14 for accelerating (pushing) a bunch of ions into the driftregion 23 of the “ToF” analyser 12, e.g. as described above. The powerconverter 31 may comprise any suitable power converter such as aswitched mode power supply (converter) that can supply electrical powersuitable for driving the acceleration (pusher) electrode 14 of the massspectrometer 10. The power converter 31 should transfer electrical powerfrom an input (AC or DC) source to an output load (comprising theacceleration (pusher) electrode 14).

In particular embodiments, the power converter 31 is supplied (with a DCinput) by the master power supply 15 (PSU) of the mass spectrometer 10.In the embodiment illustrated in FIG. 19, the power converter 31 issupplied with a 24V DC input (from the master power supply 15 (PSU)),however other input voltages could be used.

The power converter 31 may comprise any suitable power convertertopology, and should include a switching element (regulator) for(repeatedly) switching between switching states of the power converter(e.g. switched mode power supply) 31, and one or more energy storageelements, such as one or more inductors and/or capacitors, and/or one ormore transformers.

Thus according to various embodiments, the switching element of thepower converter 31 is repeatedly switched between switching states (ONand OFF). Thus according to various embodiments, the switching of thepower converter 31 comprises repeatedly switching the switching elementof the power converter 31 between switching states (ON and OFF). Suchswitching should enable the power converter 31 to convert input voltageand current characteristics to (different) output voltage and currentcharacteristics.

In various particular embodiments, the power converter 31 comprises aDC-DC step-up (boost) converter that steps-up (boosts) the voltage ofthe DC input to a higher voltage DC output suitable for driving theacceleration (pusher) electrode 14. Thus, the power converter 31 maystep-up (boost) the voltage of DC electrical power supplied by themaster power supply 15 (PSU) to a higher voltage suitable for drivingthe acceleration (pusher) electrode 14.

In various embodiments, the power converter 31 comprises an isolatedstep-up (boost) DC-DC converter. In various embodiments, the powerconverter 31 comprises a forward converter. The forward converter maycomprise any suitable forward converter topology, such as a singleswitch forward converter or a two-switch forward converter. The forwardconverter should comprise one or more (step-up) transformers and aswitching element (comprising one or more switches). One or more of theone or more transformers of the forward converter may be a planartransformer.

The power converter 31 (forward converter) may also comprise suitableinput and/or output (filtering) circuitry. In particular embodiments,the power converter 31 (forward converter) comprises output circuitrycomprising a voltage multiplier.

In various particular such embodiments, the power converter 31 comprisesa forward converter comprising a planar transformer, and outputcircuitry comprising a voltage multiplier. The Applicants have foundthat by using a voltage multiplier after the forward converter, thenumber of turns required in the transformer of the forward converter canbe reduced, thereby enabling the use of planar magnetics in thetransformer. Thus, this power supply topology provides a particularlycompact and efficient power supply, that is particularly simple andinexpensive.

The output voltage supplied by the power converter 31 (forwardconverter) should depend on the input voltage (supplied by the masterpower supply 15 (PSU)) and the switching element duty cycle D. Thus,according to various embodiments, the switching element of the powerconverter 31 (forward converter) is repeatedly switched betweenswitching states (ON and OFF), and the switching element duty cycle D(the fraction of time that the switching element is in the ON state) isrelated to the voltage step-up (boost) provided by the power converter31 (forward converter).

Where the power converter 31 comprises a forward converter comprising atransformer, the transformer turns ratio should also be related to thevoltage step-up (boost) provided by the power converter 31 (forwardconverter). Similarly, where the power converter 31 (forward converter)comprises an output voltage multiplier, the configuration of the voltagemultiplier should also be related to the voltage step-up (boost).

The precise relationship between the above factors and voltage step-upwill depend on the particular power supply topology employed. Forinstance, where the power converter 31 comprises a forward convertercomprising a transformer, then the voltage step-up ratio will typicallybe directly proportional to the switching element duty cycle D and thetransformer turns ratio.

Thus, according to various embodiments, the (hardware) configuration ofthe power converter 31 (forward converter) is chosen so as to provide asuitable voltage step-up. In various embodiments, the switching elementduty cycle D is then controlled by the controller circuitry 32 forcontrolling the output voltage in use. In various embodiments, theswitching element duty cycle D may then be controlled using suitablefeedback and/or feedforward circuitry (e.g. in the controller circuitry32) for controlling the output voltage in use.

As will be discussed further below, to facilitate synchronisation of theswitching of the switching element of the power converter 31 (forwardconverter) with the formation of the output pulses, in the manner ofvarious embodiments described herein, the configuration of the powerconverter 31 (forward converter) may also depend on the (range of)output pulse (push) frequencies with which the mass spectrometer 10 isconfigured to operate. The power converter 31 (forward converter) may beconfigured to have a range of switching frequencies that issubstantially the same as (or overlaps with) the range of output pulse(push) frequencies with which the mass spectrometer 10 is configured tooperate. The range of output pulse (push) frequencies with which themass spectrometer 10 is configured to operate (and so the range ofswitching frequencies that the power converter 31 is configured for) maybe, e.g., between 1 and 100 kHz.

In the embodiment illustrated in FIG. 19, the power converter 31(forward converter) is configured to step-up (boost) a 24V DC input to a1 kV DC output for driving the acceleration (pusher) electrode 14.However other input and/or output voltages could be used.

The switching element (regulator) of the power converter 31 (forwardconverter) may be any suitable switching element for switching the (e.g.switched mode power supply) power converter 31. The switching element ofthe power converter 31 may comprise one or more semiconductor switches,such as one or more transistor switches, such as one or morefield-effect transistors (FETs), such as one or moremetal-oxide-semiconductor field-effect transistors (MOSFETs). A (andeach) such semiconductor switch (FET) may comprise one or more gateelectrodes, wherein application of a suitable gate voltage to the one ormore gate electrodes may cause the semiconductor switch (FET) to switch(between switching states (ON and OFF)).

Thus, according to various embodiments, the switching of the switchingelement of the power converter 31 (forward converter) is caused byapplying a gate (voltage) pulse to a gate electrode of the(semiconductor) switching element (FET). As will be described in moredetail below, the timing and duty cycle of such gate pulses may becontrolled by the control circuitry 32.

A resistor-capacitor snubber network may be connected across the drainand source of the (semiconductor) switching element (FET) so as toreduce high frequency oscillations. The pulsing circuitry may compriseany suitable circuitry that can form pulses of an output of the powerconverter 31 (forward converter) suitable for driving the acceleration(pusher) electrode 14.

In various embodiments, such as the embodiment illustrated in FIG. 19,the pulsing circuitry may comprise a pulser switch 33, wherein an outputpulse is formed by pulsing the pulser switch 33 (by switching the pulserswitch 33 from an OFF state to an ON state, and then back to an OFFstate). The pulsing circuitry may form a series of plural such outputpulses (by pulsing the pulser switch 33) at the output pulse (push)frequency f_(pulse) (and with an output pulse (push) period T_(pulse)).

According to various embodiments, such as the embodiment illustrated inFIG. 19, the pulsing circuitry may further comprise polarity circuitrythat may comprise a polarity switch 34. The polarity circuitry may beconfigured so as to enable selection of the polarity of the outputpulses, e.g. the polarity switch 34 may be switchable to select thepolarity of the output pulses. Thus, the polarity circuitry (and thepolarity switch 34) may cause the output pulses to be formed with aparticular voltage polarity (positive or negative). As illustrated inFIG. 19, the polarity circuitry (and the polarity switch 34) (and so thepolarity of the output pulses) may be controlled by the controlcircuitry 32.

It will be appreciated that the polarity of an output pulse willtypically be selected (by switching the polarity switch 34 (under thecontrol of the control circuitry 32)) to have the same polarity as ionsthat are to be pushed by the pusher electrode 14, so as to generate anelectric field at the pusher electrode 14 which acts to accelerate(push) the ions away from the electrode 14 and into the flight region 23of the “ToF” analyser 12.

Where the (puller) drive unit 11 drives a puller electrode, however,then the polarity of an output pulse will typically be selected (byswitching the polarity switch 34 (under the control of the controlcircuitry 32)) to have the opposite polarity as ions that are to beaccelerated (pulled) by the puller electrode.

According to various embodiments, such as the embodiment illustrated inFIG. 19, the pulsing circuitry may further comprise offset circuitry 35.The offset circuitry 35 may be configured to apply an offset voltage,V_(offset), to the output pulses (with respect to the (floating) ground(chassis potential) of the (pusher) drive unit 11). Thus, the offsetcircuitry 35 may cause the output pulses to be generated with respect tothe offset voltage, V_(offset). As illustrated in FIG. 19, the offsetcircuitry 35 (and so the applied offset voltage, V_(offset)) may becontrolled by the control circuitry 32, e.g. via a digital to analogueconverter (DAC).

The offset voltage V_(offset) may be selected as desired. The offsetvoltage V_(offset) may be chosen to be close to the (floating) ground(chassis potential) of the (pusher) drive unit 11. The polarity of theoffset voltage may be chosen so as to be the opposite of the polarity ofthe output pulses. Alternatively, the polarity of the offset voltage maybe chosen so as to be the same as the polarity of the output pulses.Alternatively, the polarity of the offset voltage may independent of thepolarity of the output pulses. According to various embodiments, theoffset voltage is selected so as to improve ion beam steering.

FIG. 19 shows an embodiment in which the polarity switch 34 is in apositive ion mode (in the case that the drive unit 11 is a pusher driveunit), wherein the polarity switch 34 is switched such that the negativeterminal of the switched mode power supply 31 is connected to the offsetvoltage V_(offset) provided by the offset circuitry 35. In a negativeion mode (in the case that the drive unit 11 is a pusher drive unit),the polarity switch 34 would be switched such that the positive terminalof the switched mode power supply 31 would be connected to the offsetvoltage V_(offset). It should be noted that in the embodimentillustrated in FIG. 19, the polarity of the offset voltage, V_(offset),is independent of the ion mode, however, as discussed above, this neednot be the case.

Thus, according to various embodiments, the pulsing circuitry of the(pusher) drive unit 11 comprises one or more switches, such as thepulser switch 33 and/or the polarity switch 34. A (and each) such switchmay comprise one or more semiconductor switches, such as one or moretransistor switches, such as one or more field-effect transistors(FETs), such as one or more metal-oxide-semiconductor field-effecttransistors (MOSFETs). A (and each) such semiconductor switch (FET)should comprise one or more gate electrodes, wherein application of asuitable gate voltage to the one or more gate electrodes will cause thesemiconductor switch (FET) to switch.

In various particular embodiments (such as the embodiment illustrated inFIG. 19), a (and each) switch of the pulsing circuitry (the pulserswitch 33 and/or the polarity switch 34) comprises a (high-voltage)changeover switch. In such embodiments, an output pulse may be generatedby the pulser switch 33 changing over from one terminal of the switchedmode power supply 31 (e.g. the negative terminal) to the other terminal(e.g. the positive terminal), and then back to the original terminal(e.g. the negative terminal).

A (and each) (high-voltage) changeover switch of the pulsing circuitry(the pulser switch 33 and/or the polarity switch 34) should comprise twoON/OFF switches: one for pulling up and one for pulling down. Each suchON/OFF switch may comprise one or more semiconductor switches (FETs) inseries. Each such semiconductor switch (FET) may be protected using oneor more transient suppression diodes. The transient suppression diodesmay also be configured to protect the (pusher) drive unit 11 fromdischarges (sparking) in the “ToF” analyser 12.

According to embodiments, each ON/OFF switch of the pulsing circuitry(the pulser switch 33 and/or the polarity switch 34) comprises one ormore semiconductor switches (FETs) in series, and the gate electrodes ofthe one or more semiconductor switches (FETs) in series of an ON/OFFswitch are driven using a transformer. The transformer for an (and each)ON/OFF switch may comprise a primary winding and, for each of the one ormore semiconductor switches (FETs) in series of the (respective) ON/OFFswitch, a secondary winding.

The Applicants have found that the use of such a transformer can help toensure that the one or more semiconductor switches (FETs) in an ON/OFFswitch operate as close to simultaneously as possible. Furthermore,transformers are capable of producing large pulses of current which cancause fast switching of the semiconductor switches (FETs). As such, thisarrangement can help to avoid output kinks, for example when the pulserswitch 33 is changed over (switched). This can help to ensure that thepulsing circuitry forms uniformly shaped output pulses, for example.

A (and each) transformer of the pulsing circuitry may be a planartransformer comprising planar magnetics. This may help to reducemanufacturing costs, for example.

According to various embodiments, the various switches of the pulsercircuitry (such as the pulser switch 33 and/or the polarity switch 34)may each be controlled by the control circuitry 32. Thus, a (and each)ON/OFF switch of the pulsing circuitry may be controlled by the controlcircuitry 32. This may be achieved by the control circuitry 32 causingsuitable gate pulses to be applied to gate electrodes of the(semiconductor) switches (FETs). Top-up pulses may be applied to theswitches (FETs) so as to hold the switches in an ON (or OFF) state.

Thus, according to various embodiments, the control circuitry 32 causesthe pulsing circuitry (pulser switch 33) (to pulse (changeover)) to formthe output pulses. The control circuitry 32 may cause the pulsingcircuitry to form an output pulse by generating timing signals forcausing switches (FETs) of the pulsing circuitry (pulser switch 33) toswitch (pulse), e.g. in the manner described below.

Thus, the (pulsing of the) pulsing circuitry (comprising the pulserswitch 33) (and so the formation of the output pulses) may be controlledby the control circuitry 32. The control circuitry 32 may in turn becontrolled by the master controller 13.

According to various embodiments, the (pusher) drive unit 11 may formpulses synchronised with an external trigger (provided by the mastercontroller 13). Alternatively, the (pusher) drive unit 11 may operate ina “free-running” mode of operation, in which the (controller 32 of the)drive unit 11 itself determines when to form output pulses.

According to various embodiments, when the (pusher) drive unit 11 is notforming output pulses, the (pusher) drive unit 11 may be operated in a“stand-by” mode of operation, in which the power converter 31 (forwardconverter) is continually operated (by supplying gate pulses to theswitching element of the power converter 31 (forward converter)) insubstantially the same manner as it would be if output pulses were beinggenerated. This may help to avoid warm up transients.

The (controller 32 of the) drive unit 11 may enter the “stand-by” modewhen the (controller 32 of the) drive unit 11 determines that no triggersignals have been received within a certain time period. The drive unit11 may exit the “stand-by” mode when the (controller 32 of the) driveunit 11 determines that a trigger has been received (from the mastercontroller 13).

According to various embodiments, the acceleration (pusher) electrode 14may be a single plate, or a plate stack. The acceleration (pusher)electrode 14 may be electrically floating. Thus, the DC load due to theacceleration (pusher) electrode 14 may be zero, and the AC load due tothe acceleration (pusher) electrode 14 may be the stray capacitancebetween the (pusher) electrode 14 and the surrounding chassis. Outputpulses of current may flow through the chassis and the (relativelylarge) capacitor, C_(offset), of the offset voltage buffer of the offsetcircuitry 35.

The capacitance in the interconnecting wiring between drive unit 11 andthe acceleration (pusher) electrode 14 may be minimised by minimisingthe path length between the drive unit 11 and the acceleration (pusher)electrode 14, and additionally or alternatively by avoiding the use ofcoaxial cabling.

The damping resistor 36 may control overshoot on the output voltagepulse waveform. Additional damping resistance may be provided in thedrive unit 11, and/or in a pulse shaping network of the pulsingcircuitry (pulser switch 33).

FIG. 20 shows output pulses generated by the (pusher) drive unit 11according to various embodiments. The output pulses may be any suitablepulses that can drive the acceleration (pusher) electrode 14 of the massspectrometer 10. As illustrated in FIG. 20, in particular embodiments,the output pulses are substantially square wave voltage (amplitude)pulses. It will be appreciated that FIG. 20 does not show any outputripple or kinks that may be present. Other pulse shapes could be used.

As already mentioned, the drive unit 11 may be operable to generatepulses of the same polarity as ions that are to be pushed (and/or theopposite polarity as ions that are to be pulled). Thus, as illustratedin FIG. 20, in a positive ion mode, the pusher drive unit 11 may beoperable to generate positive polarity voltage square wave pulses, whilein a negative ion mode, the pusher drive unit 11 may be operable togenerate negative polarity voltage square wave pulses.

FIG. 20 also illustrates how the (pusher) drive unit 11 may generatepulses with respect to the offset voltage V_(offset), e.g. for ion beamsteering purposes. FIG. 20 illustrates an offset voltage V_(offset) ofopposite polarity to ion polarity; however as mentioned above, (theoffset circuitry 35 of) the (pusher) drive unit 11 may also provide anoffset voltage V_(offset) of the same polarity as ion polarity, or anoffset voltage that is independent of ion polarity, or indeed no offsetat all.

The voltage amplitude of an output pulse may be any voltage suitable fordriving the acceleration electrode 14. It will be appreciated that thevoltage of an output pulse will typically be (substantially) the same asthe voltage of the output of the power converter 31 (forward converter).The (peak) voltage amplitude of an output pulse (and the voltageamplitude of the output of the power converter 31 (forward converter))may be selected from the group consisting of: (i) <600V; (ii) 600V to700V; (iii) 700V to 800V; (iv) 800V to 900V; (v) 900V to 1000V; (vi)1000V to 1100V; and (vii) >1100V. The polarity of an output pulse may bepositive or negative.

According to various particular embodiments, the (peak) voltageamplitude of an output pulse is selectable to be any voltage betweenapproximately 600V to 1100V. For example, the (peak) voltage of anoutput pulse may be (±) 1 kV.

The offset voltage V_(offset) may be any suitable voltage. The offsetvoltage V_(offset) may be selected from the group consisting of: (i)<−10V; (ii) −10V to −5V; (iii) −5V to 0V; (iv) 0V to 5V; (v) 5V to 10V;and (vi) >10V.

As already mentioned, the (pusher) drive unit 11 may generate pluraloutput pulses at a pulse (push) frequency f_(pulse), and with periodT_(pulse). The pulse (push) period T_(pulse) may be between 1 s and 100μs. The pulse (push) period T_(pulse) may be selected from the groupconsisting of: (i) <1 μs; (ii) 1 μs to 2 μs; (iii) 2 μs to 10 μs; (iv)10 μs to 20 μs; (v) 20 μs to 50 μs; (vi) 50 μs to 70 μs; (vii) 70 μs to85 μs; (viii) 85 μs to 100 μs; and (ix) >100 μs. Typical pulse periods,T_(pulse), may be between 20 μs and 50 μs. The power converter 31 mayaccordingly be configured to be switchable at the same (corresponding)frequencies.

FIG. 21 shows a block diagram of the (pusher) drive unit 11 in moredetail according to various embodiments, comprising the power converter31 (step-up converter), the control circuitry 32 (FPGA), the pulsingcircuitry (comprising the pulser switch 33), the polarity circuitry(comprising the polarity switch 34), and the offset circuitry 35.

As shown in FIG. 21, electrical power (supplied by the master powersupply 15) may be appropriately filtered and passed through a soft startcircuit 51 (and fuse) before being supplied to the power converter 31.Power to other components of the (pusher) drive unit 11 may also besupplied via the soft start circuit 51 (and fuse).

As illustrated in FIG. 21, the (pusher) drive unit 11 may also compriseADC trigger circuitry 52. The ADC trigger circuitry 52 may be configuredto generate an ADC trigger signal synchronised with an output pulse fortriggering the ADC unit 16 to start recording a signal from the detector24 of the “ToF” analyser 12 in synchronisation with the output pulsegenerated by the (pusher) drive unit 11, e.g. as described above.

The control circuitry 32 may be any suitable circuitry and may beconfigured to synchronise switching of the switching element of thepower converter 31 with formation of output pulses by the pulsingcircuitry (by pulsing of the pulser switch 33).

The controller 32 of the (pusher) drive unit 11 may control the powerconverter 31. The controller 32 of the (pusher) drive unit 11 may (alsoor instead) control the other components of the (pusher) drive unit 11,such as the pulsing circuitry (the pulser switch 33) and/or the polaritycircuitry (the polarity switch 34) and/or the offset circuitry 35 and/orthe ADC trigger circuitry 52.

The controller 32 of the (pusher) drive unit 11 may in turn becontrolled by the master controller 13 of the mass spectrometer 10. Asillustrated in FIG. 21, instructions and/or (configuration) parametersfrom the master controller 13 may be stored in a memory 54 (EEPROM)accessible by the controller 32, and the controller 32 may operate inaccordance with those instructions and/or (configuration) parameters.

A thermometer 55 may be used to monitor the temperature of the (pusher)drive unit 11 so as to ensure stable operation of the controller 32 and(pusher) drive unit 11. Cooling of the drive unit 11 (e.g. by fans) maybe controlled based on temperature readings from the thermometer 55.

As discussed above, by synchronising the switching of the switchingelement of the power converter 31 (forward converter) with the formationof the output pulses by the pulsing circuitry (pulser switch 33), the(pusher) drive unit 11 can generate (more) uniformly shaped outputpulses since any ripple on the output of the power converter 31 shouldhave substantially the same effect on the shape of each output pulse,since each pulse should always occur at the same point in the ripple(and switching) cycle.

The controller 32 may synchronise the switching of the switching elementof the power converter 31 with the formation of the output pulses in anysuitable manner, e.g. by the use of a suitable feedback and/orfeedforward mechanism. In various particular embodiments, the controller32 controls the pulsing circuitry (pulser switch 33) and controls thepower converter 31 (forward converter) to switch (pulse) insynchronisation with each other.

In various particular embodiments, such as the embodiment illustrated inFIG. 21, this is achieved by the controller 32 sending suitable(synchronised) timing signals to the power converter 31 (forwardconverter) and to the pulsing circuitry (comprising the pulser switch33). As shown in FIG. 21, the controller 32 may generate these timingsignals based on the same clock signal, which may be based onoscillations of a single oscillator 53.

The Applicants have recognised that controlling the switching of theswitching element of the power converter 31 and formation of the outputpulses by the pulsing circuitry based on the same clock signal enables ahigh degree of synchronisation between the switching of the switchingelement of the power converter 31 and the formation of the output pulsesby the pulsing circuitry, e.g. to within the time resolution of theclock signal. This improves pulse shape uniformity.

The controller 32 may synchronise the switching of the switching elementof the power converter 31 with the formation of the output pulses by(the timing signals) causing gate pulses to be applied to a gateelectrode of the switching element in synchronisation with the formationof output pulses by the pulsing circuitry. Thus, a gate pulse may beapplied to the gate electrode of the switching element to cause thepower converter 31 to switch in synchronisation with a changeover of thepulser switch 33.

For example, FIG. 22 shows a series of output pulses (push pulses)formed by (pulsing the pulser switch 33 of) the pulsing circuitry withperiod T_(pulse). FIG. 22 also illustrates the relative timings of aseries of gate pulses applied to a gate electrode of the switchingelement of the power converter 31 (forward converter) to cause switching(pulsing) of the power converter 31 (forward converter) insynchronisation with the output pulses. Each gate pulse may cause thepower converter 31 (forward converter) to switch from an OFF state to anON state, and then back to an OFF state.

As shown in FIG. 22, the controller 32 may synchronise each gate pulsewith an output pulse such that each gate pulse begins after apredetermined time delay, T_(gdelay), following an output pulse. Thus,the controller 32 may cause a gate pulse to be generated (applied)T_(gdelay) after a changeover of the pulser switch 33.

In the illustrated embodiment, each gate pulse is synchronised with thetrailing edge of an output pulse, and so begins after a time T_(gdelay)following the trailing edge of an output pulse (and the associatedchangeover of the pulser switch 33). It will be appreciated, however,that it would also be possible for a gate pulse to be synchronised witha different point on the output pulse waveform, such as the leading edgeor middle of the output pulse, or a point in between output pulses.Thus, for example, the parameter T_(gdelay) may alternatively be definedwith respect to the leading edge of an output pulse. The differencebetween synchronisation with leading or trailing edges of output pulsesmay become significant where output pulse width can vary.

It will also be appreciated that it is possible for each gate pulse tobegin before, at the same time as, during, or after an output pulse.Thus, the time delay parameter, T_(gdelay), may be selected to have apositive value, or a negative value (or to be zero), as desired.

According to various embodiments, the time delay between the trailingedge of an output pulse and the beginning of a gate pulse, T_(gdelay),is selected from the group consisting of: (i) <0 ns; (ii) 0 ns to 50 ns;(iii) 50 ns to 100 ns; (iv) 100 ns to 1 μs; (v) 1 μs to 10 μs; (vi) 10μs to 50 μs; (vii) 50 μs to 85 μs; (viii) 85 μs to 100 μs; and (ix) >100μs. Typically, T_(gdelay) may be constrained to lie between zero and theoutput pulse period T_(pulse). A typical value of T_(gdelay) may be 100ns. According to various embodiments, the tolerance on T_(gdelay) is±100 ns.

Thus, according to various embodiments, the controller 32 synchronisesthe switching of the power converter 31 (forward converter) with theformation of the output pulses by controlling the phase between theoutput pulse waveform and the gate pulse waveform to be a particularfixed, e.g. selected, e.g. predetermined, value (T_(gdelay)).

The start of an output pulse (and the associated changeover of thepulser switch 33) may be used as the reference for all the other eventsin the controller 32, so the controller 32 may determine the start of agate pulse with respect to the start of the output pulse, based on thewidth of the output pulse, and the time delay parameter between thetrailing edge of the output pulse and the beginning of the gate pulse,T_(gdelay).

As shown in FIG. 22, according to various embodiments, the gate pulseperiod, T_(switch), may be controlled (by the controller 32) to be(substantially) equal to the output pulse period, T_(pulse). Thus,according to various embodiments, such as the embodiment illustrated inFIG. 22, each output pulse may be associated with a corresponding(single) gate pulse.

However, it would also be possible, for example, for the switching ofthe switching element of the power converter 31 to be synchronised withthe formation of the output pulses such that the frequency (or period)of switching of the switching element of the power converter 31 is equalto an integer times the frequency, f_(pulse), (or period, T_(pulse)) ofthe formation of the output pulses.

Thus, during each acceleration (push) period, T_(pulse), the switchingelement of the power converter 31 may be switched (and a gate pulse maybe generated) any suitable integer number of times, n, such as (n=) 1, 2or more. It will be appreciated that such embodiments can generateuniformly shaped output pulses since any ripple on the output of thepower converter 31 should still have substantially the same effect onthe shape of each output pulse.

According to various embodiments, the time delay between (the trailingedge of) an output pulse and (the beginning of) a gate pulse,T_(gdelay), is selected to ensure that each gate pulse (and theswitching of the switching element of the power converter 31) occurs ata point in the pulse (push) period before any ions have arrived at thedetector 24. The Applicants have recognised that the ion detectionsystem will typically ignore the detector 24 output for a short periodof time after an output pulse, so any noise transients generated duringthis period will be ignored. Such noise transients can be generated bycoupling of the output pulses through the detector 24.

Thus, in various particular embodiments, a gate pulse is generated (andapplied) shortly after an output pulse. Thus, in various particularembodiments the ratio between the time delay parameter, T_(gdelay), andthe output pulse period, T_(pulse), T_(gdelay)/T_(pulse) is selectedfrom the group consisting of: (i) <0.001%; (ii) 0.001% to 0.01%; (iii)0.01% to 0.1%; (iv) 0.1% to 0.5%; (v) 0.5% to 1%; (vi) 1% to 10%; and(vii) >10%.

As already mentioned, the voltage step-up provided by the powerconverter 31 (forward converter) may depend on the duty cycle D of theswitching element of the power converter 31 (forward converter) (i.e.the fraction of time that the switching element is in the ON state). Thevoltage step-up provided by the power converter 31 may accordinglydepend on the duty cycle D of the gate pulse waveform. Thus, accordingto various embodiments, the controller 32 causes the width of gatepulses to be varied to control the voltage of the output of the powerconverter 31 (forward converter).

As illustrated in FIG. 22, the gate pulse width may be constrained tolie within a suitable range, T_(g(min)) to T_(g(max)). T_(g(min)) willbe less than T_(g(max)) but may otherwise be selected from the groupconsisting of: (i) 0 μs; (ii) 0 μs to 1 μs; (iii) 1 μs to 2 μs; (iv) 2μs to 3 μs; (v) 3 μs to 4 μs; (vi) 4 μs to 5 μs; (vii) 5 μs to 6 μs;(viii) 6 μs to 7 μs; (ix) 7 μs to 8 μs; (x) >8 μs. A typical value ofT_(g(min)) may be 0 μs.

T_(g(max)) will be greater than T_(g(min)) but may otherwise be selectedfrom the group consisting of: (i) <1 μs; (ii) 1 μs to 2 μs; (iii) 2 μsto 3 μs; (iv) 3 μs to 4 μs; (v) 4 μs to 5 μs; (vi) 5 μs to 6 μs; (vii) 6μs to 7 μs; (viii) 7 μs to 8 μs; (ix) >8 μs. A typical value ofT_(g(max)) may be 7.65 μs.

Thus according to various embodiments, the width of a gate pulse may beselected from the group consisting of: (i) <1 μs; (ii) 1 μs to 3 μs;(iii) 3 μs to 5 μs; (iv) 5 μs to 7 μs; (v) 7 μs to 8 μs; and (vi) >8 μs.

FIG. 23A shows a block diagram of the controller 32 comprising feedbackcircuitry for controlling the voltage of the output of the powerconverter 31 (forward converter), according to various embodiments.

As shown in FIG. 23A, the controller 32 may comprise a pulse widthmodulator (PWM) 71 configured to generate the gate pulses for applyingto the gate electrode of the switching element of the power converter 31(forward converter). The PWM 71 may convert a control signal, pwmin,into output gate pulses having widths that are proportional to pwmin.The so-generated gate pulses may then be applied to the gate electrodeof the switching element of the power converter 31 (forward converter),e.g. as described above.

As illustrated in FIG. 23A, a voltage setpoint may be provided by themaster controller 13, and an error value E corresponding to thedifference between the setpoint and a measured output voltage may bedetermined by the feedback circuitry. The error value E may beconstrained by limiter 72 according to limits provided by the mastercontroller 13, such as ±5V. This may help to avoid large changes. Thecontrol signal pwmin may then be determined based on proportional 73 andintegral 74 gain terms.

Thus, according to various embodiments the control circuitry 32comprises feedback circuitry configured to control the voltage of theoutput of the power converter 31. The feedback circuitry may beconfigured to do this by controlling the width of the gate pulses basedon an output voltage feedback signal.

As shown in FIG. 23A, each gate pulse output by PWM 71 may besynchronised with an output pulse based on a timing signal, push sync.

The PWM may be run at a high clock frequency (e.g. 200 MHz), so that thewidth of the generated gate pulses has a high resolution (e.g. 5 ns).Simulations have shown that such high time resolution helps to limitripple on the output pulse shape to acceptable levels. Thus, accordingto various embodiments, the feedback circuitry is operable to controlthe width of the gate pulses with a resolution selected from the groupconsisting of: (i) <1 ns; (ii) 1 ns to 5 ns; (iii) 5 ns to 10 ns; (iv)10 ns to 20 ns; and (v) >10 ns.

The controller 32 may be implemented as desired, e.g. as a suitablemicroprocessor system. In various particular embodiments, such as theembodiment illustrated in FIG. 21, the controller 32 is implemented in afield-programmable gate array (FPGA).

The Applicants have found that using a FPGA rather than, e.g. anexternal chip, means that the controller 32 can generate a wide range ofswitching frequencies in a stable manner. Furthermore, implementing thecontroller 32 in FPGA allows the feedback circuitry to implementproportional and integral gain terms that can be varied with gate pulsefrequency.

The controller 32 may be isolated from the power converter 31, e.g.using a high-speed opto-coupler, e.g. to ensure that the input powersupplied to the power converter 31 does not return via the drive unit 11chassis.

FIG. 23B shows a block diagram of the controller 32 comprising circuitryfor controlling the voltage of the output of the power converter 31(forward converter), according to various embodiments.

As shown in FIG. 23B, the controller 32 may comprise a pulse widthmodulator (PWM) 71 configured to generate gate pulses for applying tothe gate electrode of the switching element of the power converter 31(forward converter). The PWM 71 may convert a control signal, pwmin,into output gate pulses having widths that are proportional to pwmin.The so-generated gate pulses may then be applied to the gate electrodeof the switching element of the power converter 31 (forward converter),e.g. as described above.

As illustrated in FIG. 23B, an output voltage set-point may be providedby the master controller 13, and a feedback error value E correspondingto the difference between the set-point and a measured output voltagemay be determined by feedback circuitry. The error value E may beconstrained by limiter 72 according to limits provided by the mastercontroller 13, such as ±5V. This may help to avoid large changes. Thecontrol signal pwmin may then be determined based on one or more, orall, of proportional 73, integral 74 and derivative 75 gain terms.

As shown in FIG. 23B, the control signal pwmin is also determined basedon a feedforward term 76. The feedforward term may be based on ameasurement of the input DC voltage supplied to the power converter 31by the master power supply 15.

As discussed above and illustrated in FIG. 17B, in the presentembodiment, the master power supply 15 supplies (DC) power to the driveunit 11, as well as to other operational units of the mass spectrometer10, such as heater 17. The heater may be a source heater and/or adesolvation heater, e.g. as described above. When the heater turns on oroff, the load on the master power supply 15 can change abruptly, whichcan lead to variations on the input voltage supplied by the master powersupply 15 to the drive unit 11. Similarly, changes to other operationalunits of the mass spectrometer 10 can affect the input voltage suppliedto the drive unit 11. Such input variations can cause undesirablevariations on the output of the drive unit 11.

The Applicants have recognised that while feedback terms alone wouldeventually correct such an output variation, this takes time. By using afeedforward term (in addition to feedback terms), the operation of thePWM 71 can be adjusted in response to an input change before the outputhas been adversely affected. Accordingly, line regulation can beimproved.

Additionally or alternatively, a feedforward term can be based on anoperational parameter. In this case, a feedforward term can be used toprovide a predicted correction to the PWM 71 before the output has beenadversely affected.

For example, as shown in FIG. 23B, a feedforward term can be based onthe output voltage set-point provided by the master controller 13. Inthis case, a step change or a continuous (e.g. ramping) change to theoutput voltage set-point can be fed forward to adjust the PWM 71accordingly.

Similarly, a feedforward term can be based on a change to the outputvoltage polarity. Such changes can occur, for example, when a change inion mode (between positive ion and negative ion detection) is required.

In another example, a feedforward term can be based on a change to therequired acceleration electrode pulse period (T_(pulse)). Typically, thepulse period will change when the mass range of the mass spectrometer 10is changed. As discussed above, when the pulse period (T_(pulse)) issynchronised with the power converter period (T_(switch)), such a changeto the pulse period will affect the frequency of operation of the powerconverter 31, and so its output.

It would also be possible for a feedforward term to be based on anon-regular pulse period. In this case, using a feedforward term tocompensate for the different delays between subsequent pulses mayimprove output stability.

It will be appreciated therefore, that the use of a feedforward term 76can improve the stability of the output of the power converter 31(forward converter), and so improve pulse shape uniformity of the outputpulses provided by the drive unit 11, as compared to using feedbackterms alone.

Thus, according to various embodiments the control circuitry 32 controlsthe voltage of the output of the power converter 31 by controlling thewidth of the gate pulses based on an input voltage feedforward signaland an output voltage feedback signal.

In various embodiments, when any of the changes described above arerequired, the PWM 71 may be driven at a fixed rate (or a series ofdifferent fixed rates) for a certain time period, during which normalfeedback and feedforward control of the PWM 71 may be suspended. Thistime period may be a fixed time period, or may last until a desiredoutput voltage has been achieved. Once the time period has beencompleted, the normal feedback and feedforward control of the PWM 71 maybe resumed. This may help to stabilise the output in response to aninput change faster than would otherwise be possible.

As shown in FIG. 23B, each gate pulse output by PWM 71 may besynchronised with an output pulse based on a timing signal, push sync.

The PWM may be run at a high clock frequency (e.g. 200 MHz), so that thewidth of the generated gate pulses has a high resolution (e.g. 5 ns).Simulations have shown that such high time resolution helps to limitripple on the output pulse shape to acceptable levels. Thus, accordingto various embodiments, the control circuitry is operable to control thewidth of the gate pulses with a resolution selected from the groupconsisting of: (i) <1 ns; (ii) 1 ns to 5 ns; (iii) 5 ns to 10 ns; (iv)10 ns to 20 ns; and (v) >10 ns.

The controller 32 may be implemented as desired, e.g. as a suitablemicroprocessor system. In various particular embodiments, such as theembodiment illustrated in FIG. 21, the controller 32 is implemented in afield-programmable gate array (FPGA).

The Applicants have found that using a FPGA rather than, e.g. anexternal chip, means that the controller 32 can generate a wide range ofswitching frequencies in a stable manner. Furthermore, implementing thecontroller 32 in FPGA allows the implementation of various feedback andfeedforward terms that can be varied with gate pulse frequency.

The controller 32 may be isolated from the power converter 31, e.g.using a high-speed opto-coupler, e.g. to ensure that the input powersupplied to the power converter 31 does not return via the drive unit 11chassis.

FIG. 24 shows a block diagram of the controller 32 in more detailcomprising the pulse generator 71, according to various embodiments.

As shown in FIG. 24, the controller 32 may further comprise circuitry 81for communicating with the master controller 13, e.g. in the manner asdescribed above. The controller may further comprise a clock 82 forgenerating the clock signal, which may be controlled by the oscillator53.

As shown in FIG. 24, according to various embodiments, the pulsegenerator 71 may generate gate pulses for controlling the powerconverter 31 via a power converter controller 83 (step-up controller),e.g. as described above.

The pulse generator 71 may also generate suitable timing signals(make/break signals 82) for controlling (the pulsing of) the pulsingcircuitry by causing the pulser switch 33 to changeover. The pulsegenerator 71 may generate the gate pulses and the timing signals insynchronisation with each other, e.g. as described above. The pulsegenerator 71 may also generate suitable synchronised trigger signals 84for triggering the ADC 16, e.g. as described above. The pulse generator71 may use the same clock signal from the same clock 82 to generatethese signals in synchronisation with each other.

As also illustrated in FIG. 24, the control circuitry 32 may alsocomprise diagnostics circuitry which may comprise an oscilloscope 86.

The diagnostics circuitry (e.g. oscilloscope 86) may receive samples ofthe output pulses generated by the (pusher) drive unit 11, e.g. asdescribed above.

As illustrated in FIGS. 21 and 25, this may be done via an analogue todigital converter (ADC) 91. The output waveform from the pulsingcircuitry (pulser switch 33) may be AC coupled to the ADC 91 to allowwaveform parameters to be measured, including, for example, peak-to-peakamplitude and rise/fall times. Other waveform characteristics that couldbe measured include overshoot, undershoot, droop, pre-push disturbance,and post-push disturbance, amongst others.

FIG. 25 illustrates a signal path in accordance with various embodimentsin more detail. A resistor may be provided in series with a capacitivedivider to damp any high-frequency oscillations. Other damping circuitryarrangements could be used. An oscilloscope offset may be derived from aDAC output (as illustrated in FIGS. 21 and 24). The offset may becalculated so that the analogue waveform is evenly spaced within theconversion range of the oscilloscope ADC 91.

The multiplier block, M (e.g., a 16-bit number), can allow the effectsof component tolerances to be calibrated out. The low-pass filter blockcan filter high frequencies from the output, and may perform furtherprocessing, including other ways of averaging over multiple pulses.

It will be appreciated that FIG. 25 shows an example of the signal pathin which each block has a specific number of bits, however other numbersof bits could be used at each block, if desired. Correspondingly,multiplication and division factors may be different to thoseillustrated in FIG. 25.

The ADC may be used to sample the waveform output from the pulsingcircuitry (pulser switch 33). The waveform may be acquired by taking asequence of samples from a single push (pulse). However, in order toincrease the timing resolution of the sampling system, the waveform maybe acquired by taking sequences of samples from more than one push(pulse). The sequences may be offset in time and the samples from thesequences interleaved so that the resulting waveform has a highersampling rate than the converter sampling rate.

FIG. 26 illustrates this sampling arrangement in which sequences ofsamples are taken from four pushes (pulses). Other numbers of pushes(pulses) could be used, such as one, two, three, or more than four. Asillustrated in FIG. 26, for each sequence of samples, the waveform maybe sampled periodically with period T_(sampling). The sequences ofsamples may be offset in time with respect to each other by an offsettime T_(offset)=T_(sampling)/N, where N is the number of sequences(pulses). For example, in the example illustrated in FIG. 26,T_(sampling) is 20 ns, and T_(offset) is 5 ns.

In various embodiments, the maximum pulse width may be (around) 5 μs andthe minimum period may be (around) 20 μs (other arrangements would,however, be possible). In the example illustrated in FIG. 26, having afixed sampling length of 10 μs (2000 samples at 5 ns intervals) issufficient to include the maximum width pulses and have a significantinter-pulse capture while still retaining sufficient time from the endof the sampling to the start of the next pulse to accommodate anyforeseeable jitter. Other numbers of samples and sample intervals couldbe used.

A complete waveform may be captured every one or more push (pulse)cycles, e.g. in the example of FIG. 26 every four push (pulse) cycles.The first full capture may be transferred to an averaged waveform. Eachsubsequent complete waveform may be used to refine the averagedwaveform.

An averaging filter algorithm may be used as follows:

${y_{i} = {y_{i - 1} + \frac{x_{i} - y_{i - 1}}{2^{n}}}},$

where x_(i) is sixteen times the present ADC sample at point j, y_(i) isthe present filter output for point j, y_(i−1) is the previous filteroutput for point j, and n is a damping factor. n may be, for example, 2.

The oscilloscope samples may be provided, e.g. on request, to the mastercontroller 81 (or elsewhere). Various read back values (diagnosticparameters) may then be (automatically) calculated from these samples.

For example, as illustrated in FIG. 27, one or more or each of thefollowing may be calculated:

1. Peak to peak pulse amplitude. This may be simply the maximum waveformvalue minus the minimum waveform value.

2. The rise time, e.g. from 20% to 80% or 10% to 90%, of the peak topeak amplitude.

3. The fall time, e.g. from 80% to 20% or 90% to 10%, of the peak topeak amplitude.

Various other parameters of the pulse waveform may be calculated asdesired, such as parameters quantifying overshoot, undershoot, droop,pre-push disturbance, and post-push disturbance, e.g. settling time.

The calculated values may then be used and/or displayed, e.g. tofacilitate a diagnostic of the pusher unit 11, e.g. to determine whetheror not the pusher unit 11 is in a correct operational state.

Although various embodiments described above relate to output pulsesproduced by an acceleration electrode drive unit being measured by anoscilloscope, it is also possible for other changing (or static)voltages within the instrument, such as a voltage applied to an ionguide, to also or instead be measured by the oscilloscope.

Although various embodiments described above relate to operating aswitching element of a power converter of an acceleration electrodedrive unit in synchronisation with pulsing circuitry, it is alsopossible for the switching element of another mass spectrometer powerconverter to be operated in synchronisation with the pulsing circuitry.This can also improve the operation of the spectrometer, e.g. where thepower converter in question produces a ripple. The output of the powerconverter may be supplied to, for example, an ion source, one or moreion guides, a detector, ion optics, and the like, of the massspectrometer.

Although various embodiments described above relate to controlling apower converter of an acceleration electrode drive unit based on afeedforward signal, it is also possible for a power converter of anothermass spectrometer operational unit to be controlled based on afeedforward signal. This can also improve the operation of thespectrometer, e.g. where a stable output of the power converter inquestion is desirable. The output of the power converter may be suppliedto, for example, an ion source, one or more ion guides, a detector, ionoptics, and the like, of the mass spectrometer.

Although the present invention has been described with reference topreferred embodiments, it will be understood by those skilled in the artthat various changes in form and detail may be made without departingfrom the scope of the invention as set forth in the accompanying claims.

1. A mass spectrometer comprising: a power converter configured toconvert an input voltage to an output voltage; measuring circuitryconfigured to measure the input voltage; and control circuitryconfigured to control the power converter based on the measured inputvoltage.
 2. The mass spectrometer of claim 1, further comprising pulsingcircuitry operable to form electrical output pulses from the output ofthe power converter.
 3. The mass spectrometer of claim 2, furthercomprising: processing circuitry configured to predict the effect of achange in a desired parameter for the electrical output pulses on thepower converter output voltage; and control circuitry configured tocontrol the power converter based on the prediction.
 4. The massspectrometer of claim 3, wherein the parameter for the electrical outputpulses comprises: (i) a voltage amplitude; (ii) a voltage polarity;(iii) a pulse period; (iv) a pulse width; and/or (v) an inter-pulseperiod; of the electrical output pulses.
 5. The mass spectrometer ofclaim 2, further comprising: a Time of Flight (ToF) mass analysercomprising an acceleration electrode; wherein the mass spectrometer isconfigured such that the electrical output pulses are supplied to theacceleration electrode.
 6. The mass spectrometer of claim 1, wherein thepower converter comprises a step-up converter comprising a switchingelement.
 7. The mass spectrometer of claim 6, further comprisingsynchronisation circuitry configured to synchronise the switchingelement with the pulsing circuitry.
 8. The mass spectrometer of claim 6,wherein: the switching element comprises a gate electrode; the controlcircuitry comprises pulse generating circuitry configured to generategate pulses to be applied to a gate electrode of the switching element;and the control circuitry is configured to control the power converterby controlling one or more properties of gate pulses applied to the gateelectrode of the switching element.
 9. The mass spectrometer of claim 8,wherein the control circuitry is configured to control the powerconverter based on the measured input voltage by controlling the widthof the gate pulses applied to the gate electrode of the switchingelement.
 10. The mass spectrometer of claim 8, wherein the controlcircuitry is configured to, in response to a change in a desiredparameter for the electrical output pulses, cause the pulse generatingcircuitry to generate gate pulses at a selected rate for a selected timeperiod.
 11. The mass spectrometer of claim 1, further comprising: amaster power supply configured to supply the input voltage to the powerconverter.
 12. The mass spectrometer of claim 11, further comprising oneor more operational units, wherein the master power supply is configuredto supply electrical power to each of the one or more operational units.13. The mass spectrometer of claim 12, wherein at least one of the oneor more operational units comprises a heater.
 14. The mass spectrometerof claim 1, further comprising: measuring circuitry configured tomeasure the output voltage; and control circuitry configured to controlthe power converter based on the measured output voltage.
 15. A massspectrometer comprising: a power converter configured to convert aninput voltage to an output voltage; pulsing circuitry operable to formelectrical output pulses from the output of the power converter;processing circuitry configured to predict the effect of a change in adesired parameter for the electrical output pulses on the powerconverter output voltage; and control circuitry configured to controlthe power converter based on the prediction.
 16. A method of massspectrometry comprising: using a power converter to convert an inputvoltage to an output voltage; measuring the input voltage; andcontrolling the power converter based on the measured input voltage. 17.The method of claim 16, further comprising forming electrical outputpulses from the output of the power converter.
 18. The method of claim17, further comprising: predicting the effect of a change in a desiredparameter for the electrical output pulses on the power converter outputvoltage; and controlling the power converter based on the prediction.19. The method of claim 17, further comprising supplying the electricaloutput pulses to an acceleration electrode of a Time of Flight (ToF)mass analyser.
 20. The method of claim 16, wherein the power convertercomprises a step-up converter comprising a switching element comprisinga gate electrode; and wherein the method comprises: controlling thepower converter by controlling one or more properties of gate pulsesapplied to the gate electrode of the switching element.